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IKZF4 IKAROS family zinc finger 4 [ Bos taurus (domestic cattle) ]

Gene ID: 540671, updated on 4-Oct-2024

Summary

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Official Symbol
IKZF4provided by VGNC
Official Full Name
IKAROS family zinc finger 4provided by VGNC
Primary source
VGNC:VGNC:30105
See related
BGD:BT23986; Ensembl:ENSBTAG00000012636
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
ZNFN1A4
Orthologs
human mouse all
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Genomic context

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See IKZF4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (57289459..57314367, complement)

Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132345300 Neighboring gene erb-b2 receptor tyrosine kinase 3 Neighboring gene ribosomal protein S26 Neighboring gene uncharacterized LOC132345301 Neighboring gene sulfite oxidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An ordered comparative map of the cattle and human genomes. Band MR, et al. Genome Res, 2000 Sep. PMID 10984454, Free PMC Article
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein Eos
Names
zinc finger protein, subfamily 1A, 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001192764.1 → NP_001179693.1  zinc finger protein Eos

    See identical proteins and their annotated locations for NP_001179693.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000005
    UniProtKB/TrEMBL
    A0AAA9TGU9, F1N670
    Conserved Domains (3) summary
    COG5189
    Location:211 → 271
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:161 → 181
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:201 → 226
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    57289459..57314367 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005206671.5 → XP_005206728.1  zinc finger protein Eos isoform X3

    See identical proteins and their annotated locations for XP_005206728.1

    UniProtKB/TrEMBL
    A0AAA9TEE6, A0AAA9TKI2
    Related
    ENSBTAP00000096775.1, ENSBTAT00000100631.1
    Conserved Domains (3) summary
    COG5048
    Location:138 → 195
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:114 → 134
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:154 → 179
    zf-H2C2_2; Zinc-finger double domain

  2. XM_005206670.5 → XP_005206727.1  zinc finger protein Eos isoform X3

    See identical proteins and their annotated locations for XP_005206727.1

    UniProtKB/TrEMBL
    A0AAA9TEE6, A0AAA9TKI2
    Conserved Domains (3) summary
    COG5048
    Location:138 → 195
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:114 → 134
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:154 → 179
    zf-H2C2_2; Zinc-finger double domain

  3. XM_024992079.2 → XP_024847847.1  zinc finger protein Eos isoform X2

    UniProtKB/TrEMBL
    A0AAA9TGU9, F1N670
    Related
    ENSBTAP00000038008.3, ENSBTAT00000038192.5
    Conserved Domains (3) summary
    COG5189
    Location:211 → 271
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:161 → 181
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:201 → 226
    zf-H2C2_2; Zinc-finger double domain

  4. XM_005206675.4 → XP_005206732.1  zinc finger protein Eos isoform X4

    See identical proteins and their annotated locations for XP_005206732.1

    UniProtKB/TrEMBL
    A0AAA9TEE6
    Conserved Domains (2) summary
    COG5048
    Location:83 → 140
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:59 → 79
    ZF_C2H2; C2H2 Zn finger [structural motif]

  5. XM_024992078.2 → XP_024847846.1  zinc finger protein Eos isoform X1

    UniProtKB/TrEMBL
    A0AAA9T6Y1, A0AAA9TEE6
    Related
    ENSBTAP00000092511.1, ENSBTAT00000092972.1
    Conserved Domains (3) summary
    COG5189
    Location:233 → 293
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:183 → 203
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:223 → 248
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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