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ZBTB5 zinc finger and BTB domain containing 5 [ Bos taurus (domestic cattle) ]

Gene ID: 518910, updated on 4-Oct-2024

Summary

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Official Symbol
ZBTB5provided by VGNC
Official Full Name
zinc finger and BTB domain containing 5provided by VGNC
Primary source
VGNC:VGNC:37087
See related
BGD:BT19750; Ensembl:ENSBTAG00000007761
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See ZBTB5 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 8 NC_037335.1 (61565475..61594274, complement)

Chromosome 8 - NC_037335.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein uL23-like Neighboring gene glyoxylate and hydroxypyruvate reductase Neighboring gene U6 spliceosomal RNA Neighboring gene RNA polymerase I subunit E Neighboring gene F-box protein 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037335.1 Chromosome 8 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC142522

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077937.2 → NP_001071405.1  zinc finger and BTB domain-containing protein 5

    See identical proteins and their annotated locations for NP_001071405.1

    Status: PROVISIONAL

    Source sequence(s)
    BC126574
    UniProtKB/TrEMBL
    A0JN94
    Related
    ENSBTAP00000100541.1, ENSBTAT00000117303.1
    Conserved Domains (3) summary
    sd00017
    Location:614 → 634
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:14 → 121
    BTB; BTB/POZ domain
    pfam13465
    Location:628 → 651
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037335.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    61565475..61594274 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005210153.4 → XP_005210210.1  zinc finger and BTB domain-containing protein 5 isoform X1

    UniProtKB/TrEMBL
    A0AAA9S1F9
    Conserved Domains (4) summary
    smart00225
    Location:61 → 155
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:650 → 670
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:50 → 155
    BTB; BTB/POZ domain
    pfam13465
    Location:662 → 687
    zf-H2C2_2; Zinc-finger double domain

  2. XM_024995718.2 → XP_024851486.1  zinc finger and BTB domain-containing protein 5 isoform X3

    UniProtKB/TrEMBL
    A0JN94
    Related
    ENSBTAP00000101646.1, ENSBTAT00000089140.1
    Conserved Domains (3) summary
    sd00017
    Location:614 → 634
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:14 → 121
    BTB; BTB/POZ domain
    pfam13465
    Location:628 → 651
    zf-H2C2_2; Zinc-finger double domain

  3. XM_024995719.2 → XP_024851487.1  zinc finger and BTB domain-containing protein 5 isoform X3

    UniProtKB/TrEMBL
    A0JN94
    Related
    ENSBTAP00000094155.1, ENSBTAT00000116968.1
    Conserved Domains (3) summary
    sd00017
    Location:614 → 634
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:14 → 121
    BTB; BTB/POZ domain
    pfam13465
    Location:628 → 651
    zf-H2C2_2; Zinc-finger double domain

  4. XM_059889094.1 → XP_059745077.1  zinc finger and BTB domain-containing protein 5 isoform X1

    UniProtKB/TrEMBL
    A0AAA9S1F9
    Related
    ENSBTAP00000075921.1, ENSBTAT00000135771.1

  5. XM_024995717.2 → XP_024851485.1  zinc finger and BTB domain-containing protein 5 isoform X2

    UniProtKB/TrEMBL
    A0AAA9TCE1
    Related
    ENSBTAP00000094525.1, ENSBTAT00000135108.1
    Conserved Domains (3) summary
    sd00017
    Location:623 → 643
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:23 → 130
    BTB; BTB/POZ domain
    pfam13465
    Location:637 → 660
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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