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Samd10 sterile alpha motif domain containing 10 [ Rattus norvegicus (Norway rat) ]

Gene ID: 499957, updated on 2-Nov-2024

Summary

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Official Symbol
Samd10provided by RGD
Official Full Name
sterile alpha motif domain containing 10provided by RGD
Primary source
RGD:1563203
See related
EnsemblRapid:ENSRNOG00000036719 AllianceGenome:RGD:1563203
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1563203
Summary
Predicted to be involved in cell surface receptor protein tyrosine kinase signaling pathway. Predicted to be active in cytoplasmic side of plasma membrane. Orthologous to human SAMD10 (sterile alpha motif domain containing 10). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 126.1), Kidney (RPKM 41.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Samd10 in Genome Data Viewer
Location:
3q43
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (189077795..189082069, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (168700280..168704427, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (177091467..177095599, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uridine-cytidine kinase 1-like 1 Neighboring gene zinc finger protein 512B Neighboring gene pre-mRNA processing factor 6 Neighboring gene long intergenic non-protein coding RNA 176

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in cell surface receptor protein tyrosine kinase signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasmic side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
sterile alpha motif domain-containing protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191967.1 → NP_001178896.1  sterile alpha motif domain-containing protein 10

    See identical proteins and their annotated locations for NP_001178896.1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    A6KLY8
    Conserved Domains (1) summary
    cd09510
    Location:113 → 187
    SAM_aveugle-like; SAM domain of aveugle-like subfamily

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    189077795..189082069 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006235798.4 → XP_006235860.1  sterile alpha motif domain-containing protein 10 isoform X1

    Related
    ENSRNOP00000102250.1, ENSRNOT00000163761.1
    Conserved Domains (1) summary
    cd09510
    Location:85 → 159
    SAM_aveugle-like; SAM domain of aveugle-like subfamily
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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