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rpl15 ribosomal protein L15 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 496969, updated on 4-Nov-2024

Summary

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Official Symbol
rpl15provided by Xenbase
Official Full Name
ribosomal protein L15provided by Xenbase
Primary source
Xenbase:XB-GENE-960250
See related
Ensembl:ENSXETG00000003870 AllianceGenome:Xenbase:XB-GENE-960250
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in cytosolic ribosome. Predicted to be part of ribosomal subunit. Is expressed in anatomical system and pharyngeal arch. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 12. Orthologous to human RPL15 (ribosomal protein L15). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See rpl15 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (46641278..46648023)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (77508921..77515864, complement)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene ubiquitin conjugating enzyme E2 E1 Neighboring gene NFKB inhibitor interacting Ras-like 1 Neighboring gene nuclear receptor subfamily 1 group D member 2 Neighboring gene thyroid hormone receptor, beta Neighboring gene uncharacterized LOC116411500

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC89836

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosolic ribosome IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
part_of ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
large ribosomal subunit protein eL15; 60S ribosomal protein L15

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011478.1 → NP_001011478.1  large ribosomal subunit protein eL15

    See identical proteins and their annotated locations for NP_001011478.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088771
    UniProtKB/TrEMBL
    Q5I028
    Related
    ENSXETP00000008399.2, ENSXETT00000008399.4
    Conserved Domains (1) summary
    pfam00827
    Location:2 → 191
    Ribosomal_L15e; Ribosomal L15

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    46641278..46648023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012964627.2 → XP_012820081.1  60S ribosomal protein L15 isoform X1

    See identical proteins and their annotated locations for XP_012820081.1

    UniProtKB/TrEMBL
    F6YZG5, F6ZIV6, Q28GB4
    Related
    ENSXETP00000113083.1, ENSXETT00000123559.1
    Conserved Domains (1) summary
    pfam00827
    Location:2 → 191
    Ribosomal_L15e; Ribosomal L15
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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