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znf622 zinc finger protein 622 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 496950, updated on 4-Nov-2024

Summary

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Official Symbol
znf622provided by Xenbase
Official Full Name
zinc finger protein 622provided by Xenbase
Primary source
Xenbase:XB-GENE-982881
See related
Ensembl:ENSXETG00000007539 AllianceGenome:Xenbase:XB-GENE-982881
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
zpr9; znf622-a; znf622-b
Summary
Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be involved in ribosomal large subunit biogenesis. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in cytoplasm. Predicted to be part of preribosome, large subunit precursor. Orthologous to human ZNF622 (zinc finger protein 622). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See znf622 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (79239450..79251288, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (59094854..59105032)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene membrane associated ring-CH-type finger 11 Neighboring gene uncharacterized LOC116411716 Neighboring gene reticulophagy regulator 1 Neighboring gene uncharacterized LOC105947658 Neighboring gene myosin 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in ribosomal large subunit biogenesis IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within ribosomal large subunit biogenesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of preribosome, large subunit precursor IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
cytoplasmic 60S subunit biogenesis factor ZNF622; zinc finger protein 622

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011460.2 → NP_001011460.1  cytoplasmic 60S subunit biogenesis factor ZNF622

    See identical proteins and their annotated locations for NP_001011460.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088572
    UniProtKB/TrEMBL
    A0A6I8Q1M0, Q5I094
    Related
    ENSXETP00000061374.3, ENSXETT00000065818.3
    Conserved Domains (5) summary
    sd00020
    Location:6 → 28
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12171
    Location:68 → 91
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    pfam12756
    Location:242 → 343
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    cl26419
    Location:34 → 167
    DUF3449; Domain of unknown function (DUF3449)
    cl26642
    Location:6 → 49
    SBDS_C; SBDS protein C-terminal domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    79239450..79251288 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012964625.3 → XP_012820079.2  zinc finger protein 622 isoform X1

    UniProtKB/TrEMBL
    A0A6I8Q1M0, A0A8J0T4P3
    Conserved Domains (5) summary
    PTZ00448
    Location:6 → 49
    PTZ00448; hypothetical protein; Provisional
    COG5188
    Location:34 → 167
    PRP9; Splicing factor 3a, subunit 3 [RNA processing and modification]
    sd00020
    Location:6 → 28
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12171
    Location:68 → 91
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    pfam12756
    Location:243 → 342
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)

  2. XM_018094637.2 → XP_017950126.2  zinc finger protein 622 isoform X1

    UniProtKB/TrEMBL
    A0A6I8Q1M0, A0A8J0T4P3
    Conserved Domains (5) summary
    PTZ00448
    Location:6 → 49
    PTZ00448; hypothetical protein; Provisional
    COG5188
    Location:34 → 167
    PRP9; Splicing factor 3a, subunit 3 [RNA processing and modification]
    sd00020
    Location:6 → 28
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12171
    Location:68 → 91
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    pfam12756
    Location:243 → 342
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)

  3. XM_012964626.3 → XP_012820080.2  zinc finger protein 622 isoform X1

    UniProtKB/TrEMBL
    A0A6I8Q1M0, A0A8J0T4P3
    Conserved Domains (5) summary
    PTZ00448
    Location:6 → 49
    PTZ00448; hypothetical protein; Provisional
    COG5188
    Location:34 → 167
    PRP9; Splicing factor 3a, subunit 3 [RNA processing and modification]
    sd00020
    Location:6 → 28
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12171
    Location:68 → 91
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    pfam12756
    Location:243 → 342
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
Nucleotide Protein Strain
Heading Accession and Version

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