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zdhhc3 zinc finger DHHC-type containing 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 496743, updated on 17-Aug-2024

Summary

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Official Symbol
zdhhc3provided by Xenbase
Official Full Name
zinc finger DHHC-type containing 3provided by Xenbase
Primary source
Xenbase:XB-GENE-945752
See related
Ensembl:ENSXETG00000020145
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
godz; znf373
Orthologs
human mouse all
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Genomic context

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See zdhhc3 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (55074707..55103760)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (63691683..63720967)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene C-type lectin domain family 3 member B Neighboring gene exosome component 7 Neighboring gene enhancer of zeste 2 polycomb repressive complex 2 subunit Neighboring gene cullin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables acyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein-cysteine S-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
palmitoyltransferase ZDHHC3
NP_001011290.1
XP_012820060.1
XP_012820061.1
XP_012820062.1
XP_012820063.1
XP_012820064.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011290.1 → NP_001011290.1  palmitoyltransferase ZDHHC3

    See identical proteins and their annotated locations for NP_001011290.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088007
    UniProtKB/TrEMBL
    A0A6I8QXK6, Q5M8I6
    Related
    ENSXETP00000074339.1, ENSXETT00000091611.2
    Conserved Domains (1) summary
    pfam01529
    Location:127 → 254
    DHHC; DHHC palmitoyltransferase

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    55074707..55103760
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012964607.3 → XP_012820061.1  palmitoyltransferase ZDHHC3 isoform X1

    See identical proteins and their annotated locations for XP_012820061.1

    UniProtKB/TrEMBL
    A0A6I8QXK6, A0A803J8Q3
    Conserved Domains (1) summary
    pfam01529
    Location:127 → 254
    DHHC; DHHC palmitoyltransferase

  2. XM_012964606.3 → XP_012820060.1  palmitoyltransferase ZDHHC3 isoform X1

    See identical proteins and their annotated locations for XP_012820060.1

    UniProtKB/TrEMBL
    A0A6I8QXK6, A0A803J8Q3
    Conserved Domains (1) summary
    pfam01529
    Location:127 → 254
    DHHC; DHHC palmitoyltransferase

  3. XM_012964608.3 → XP_012820062.1  palmitoyltransferase ZDHHC3 isoform X1

    See identical proteins and their annotated locations for XP_012820062.1

    UniProtKB/TrEMBL
    A0A6I8QXK6, A0A803J8Q3
    Related
    ENSXETP00000104241.1, ENSXETT00000106386.1
    Conserved Domains (1) summary
    pfam01529
    Location:127 → 254
    DHHC; DHHC palmitoyltransferase

  4. XM_012964610.3 → XP_012820064.1  palmitoyltransferase ZDHHC3 isoform X2

    See identical proteins and their annotated locations for XP_012820064.1

    UniProtKB/TrEMBL
    A0A6I8QXK6, Q5M8I6
    Conserved Domains (1) summary
    pfam01529
    Location:127 → 254
    DHHC; DHHC palmitoyltransferase

  5. XM_012964609.3 → XP_012820063.1  palmitoyltransferase ZDHHC3 isoform X1

    See identical proteins and their annotated locations for XP_012820063.1

    UniProtKB/TrEMBL
    A0A6I8QXK6, A0A803J8Q3
    Conserved Domains (1) summary
    pfam01529
    Location:127 → 254
    DHHC; DHHC palmitoyltransferase
Nucleotide Protein Strain
Heading Accession and Version

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