sec31a SEC31 homolog A, COPII coat complex component [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: sec31aprovided by Xenbase
Official Full Name: SEC31 homolog A, COPII coat complex componentprovided by Xenbase
Primary source: Xenbase:XB-GENE-5955093
See related: Ensembl:ENSXETG00000000368 AllianceGenome:Xenbase:XB-GENE-5955093
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: sec31l1
Summary: Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in Halperin-Birk syndrome. Orthologous to human SEC31A (SEC31 homolog A, COPII coat complex component). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 30

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	1	NC_030677.2 (85339802..85406491)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	1	NC_030677.1 (91620931..91687832)

Chromosome 1 - NC_030677.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within endoplasmic reticulum to Golgi vesicle-mediated transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within vesicle-mediated transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info
located_in endoplasmic reticulum membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: protein transport protein Sec31A

Names: SEC31 homolog A, COPII coating complex component; SEC31-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001011158.2 → NP_001011158.2 protein transport protein Sec31A

See identical proteins and their annotated locations for NP_001011158.2

Status: VALIDATED

Source sequence(s)

BC084914, CR589645, CX463427, DT441317, DT441318, EG651000

UniProtKB/TrEMBL

A0A8J0PFG0, F6UZ63

Related

ENSXETP00000000780.5, ENSXETT00000000780.5

Conserved Domains (4) summary

sd00039
Location:13 → 65

7WD40; WD40 repeat [structural motif]

pfam00859
Location:949 → 1106

CTF_NFI; CTF/NF-I family transcription modulation region

cl14807
Location:579 → 702

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:121 → 336

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

85339802..85406491

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_012960801.3 → XP_012816255.1 protein transport protein Sec31A isoform X1

See identical proteins and their annotated locations for XP_012816255.1

UniProtKB/TrEMBL

A0A6I8QQJ7, F6UZ63

Conserved Domains (4) summary

PHA03247
Location:751 → 1132

PHA03247; large tegument protein UL36; Provisional

sd00039
Location:13 → 65

7WD40; WD40 repeat [structural motif]

cl14807
Location:579 → 702

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:121 → 336

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_012960803.3 → XP_012816257.1 protein transport protein Sec31A isoform X1

See identical proteins and their annotated locations for XP_012816257.1

UniProtKB/TrEMBL

A0A6I8QQJ7, F6UZ63

Conserved Domains (4) summary

PHA03247
Location:751 → 1132

PHA03247; large tegument protein UL36; Provisional

sd00039
Location:13 → 65

7WD40; WD40 repeat [structural motif]

cl14807
Location:579 → 702

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:121 → 336

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_018092797.2 → XP_017948286.1 protein transport protein Sec31A isoform X1

UniProtKB/TrEMBL

A0A6I8QQJ7, F6UZ63

Related

ENSXETP00000070701.1, ENSXETT00000104705.2

Conserved Domains (4) summary

PHA03247
Location:751 → 1132

PHA03247; large tegument protein UL36; Provisional

sd00039
Location:13 → 65

7WD40; WD40 repeat [structural motif]

cl14807
Location:579 → 702

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:121 → 336

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_018092804.2 → XP_017948293.1 protein transport protein Sec31A isoform X2

UniProtKB/TrEMBL

A0A8J0SSS4, F6UZ63

Conserved Domains (4) summary

PHA03247
Location:751 → 1120

PHA03247; large tegument protein UL36; Provisional

sd00039
Location:13 → 65

7WD40; WD40 repeat [structural motif]

cl14807
Location:579 → 702

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:121 → 336

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_018092805.2 → XP_017948294.1 protein transport protein Sec31A isoform X3

UniProtKB/TrEMBL

A0A8J0T283, F6UZ63
XM_018092808.2 → XP_017948297.1 protein transport protein Sec31A isoform X4

UniProtKB/TrEMBL

A0A8J0T315, F6UZ63

Conserved Domains (5) summary

PRK06549
Location:1026 → 1132

PRK06549; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

sd00039
Location:13 → 65

7WD40; WD40 repeat [structural motif]

pfam03154
Location:789 → 1127

Atrophin-1; Atrophin-1 family

cl14807
Location:579 → 702

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:121 → 336

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_031899038.1 → XP_031754898.1 protein transport protein Sec31A isoform X6

UniProtKB/TrEMBL

A0A6I8RKK2, F6UZ63

Related

ENSXETP00000085379.2, ENSXETT00000070608.2

Conserved Domains (4) summary

PHA03247
Location:797 → 1032

PHA03247; large tegument protein UL36; Provisional

sd00039
Location:13 → 65

7WD40; WD40 repeat [structural motif]

cl14807
Location:579 → 702

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:121 → 336

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_018092809.2 → XP_017948298.1 protein transport protein Sec31A isoform X5

UniProtKB/TrEMBL

A0A8J0SZT5, F6UZ63

Conserved Domains (5) summary

PHA03247
Location:890 → 1101

PHA03247; large tegument protein UL36; Provisional

PRK06549
Location:1022 → 1128

PRK06549; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

sd00039
Location:13 → 65

7WD40; WD40 repeat [structural motif]

cl14807
Location:579 → 702

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:121 → 336

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...