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mycl MYCL proto-oncogene, bHLH transcription factor [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 496561, updated on 17-Aug-2024

Summary

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Official Symbol
myclprovided by Xenbase
Official Full Name
MYCL proto-oncogene, bHLH transcription factorprovided by Xenbase
Primary source
Xenbase:XB-GENE-6453835
See related
Ensembl:ENSXETG00000010956
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
lmyc; l-myc; lmyc1; mycl1
Orthologs
human mouse all
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Genomic context

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See mycl in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (90896629..90905515)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (86775196..86784101)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene cyclase associated actin cytoskeleton regulatory protein 1 Neighboring gene major facilitator superfamily domain containing 2A Neighboring gene tRNA isopentenyltransferase 1 Neighboring gene uncharacterized XB5901009 Neighboring gene hippocalcin like 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein L-Myc
Names
lung carcinoma myc related oncogene 1
v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog
v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011144.1 → NP_001011144.1  protein L-Myc

    See identical proteins and their annotated locations for NP_001011144.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084506
    UniProtKB/TrEMBL
    A0A6R4ZZ01, Q5XGD6
    Related
    ENSXETP00000023946.4, ENSXETT00000023946.5
    Conserved Domains (2) summary
    pfam01056
    Location:10 → 244
    Myc_N; Myc amino-terminal region
    cd11457
    Location:256 → 344
    bHLHzip_L-Myc; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in L-Myc and similar proteins

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    90896629..90905515
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012956848.3 → XP_012812302.1  protein L-Myc isoform X1

    See identical proteins and their annotated locations for XP_012812302.1

    UniProtKB/TrEMBL
    A0A6R4ZZ01, Q5XGD6
    Conserved Domains (2) summary
    pfam01056
    Location:10 → 244
    Myc_N; Myc amino-terminal region
    cd11457
    Location:256 → 344
    bHLHzip_L-Myc; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in L-Myc and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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