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flot2 flotillin 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 496443, updated on 17-Aug-2024

Summary

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Official Symbol
flot2provided by Xenbase
Official Full Name
flotillin 2provided by Xenbase
Primary source
Xenbase:XB-GENE-5910825
See related
Ensembl:ENSXETG00000040200
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
esa; ecs1; esa1; ecs-1; flotillin-2
Orthologs
human mouse all
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Genomic context

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See flot2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (34029841..34060842)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (26459235..26490275)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene dehydrogenase/reductase (SDR family) member 13 Neighboring gene flotillin-2-like Neighboring gene uncharacterized LOC116408795 Neighboring gene microRNA mir-144 Neighboring gene microRNA mir-451

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
flotillin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011034.1 → NP_001011034.1  flotillin-2

    See identical proteins and their annotated locations for NP_001011034.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084052
    UniProtKB/TrEMBL
    A0A6I8SF28, Q5XHK4
    Related
    ENSXETP00000068496.1, ENSXETT00000082911.2
    Conserved Domains (2) summary
    cd03399
    Location:34 → 178
    SPFH_flotillin; Flotillin or reggie family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
    cl25773
    Location:6 → 417
    Flot; Flotillin

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    34029841..34060842
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012956838.3 → XP_012812292.1  flotillin-2 isoform X1

    UniProtKB/TrEMBL
    A0A6I8SF28, A0A8J0SFE1
    Related
    ENSXETP00000093398.2, ENSXETT00000101898.2
    Conserved Domains (2) summary
    COG2268
    Location:6 → 417
    YqiK; Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]
    cd03399
    Location:34 → 178
    SPFH_flotillin; Flotillin or reggie family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

RNA

  1. XR_001923960.2 RNA Sequence

  2. XR_001923962.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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