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grhl3.L grainyhead like transcription factor 3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496106, updated on 4-Nov-2024

Summary

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Official Symbol
grhl3.L
Official Full Name
grainyhead like transcription factor 3 L homeolog
Primary source
Xenbase:XB-GENE-919808
Locus tag
XELAEV_18012032mg
See related
EnsemblRapid:ENSXLAG00005034419 AllianceGenome:Xenbase:XB-GENE-919808
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
som; grhl3; tfcp2l4
Summary
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in ectoderm. Orthologous to human GRHL3 (grainyhead like transcription factor 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See grhl3.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (57307243..57323355, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (55212268..55228380, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 8B L homeolog Neighboring gene NIPA-like domain containing 3 L homeolog Neighboring gene sperm-tail PG-rich repeat containing 1 L homeolog Neighboring gene golgin subfamily A member 2-like Neighboring gene uncharacterized LOC108705446

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
grainyhead-like protein 3 homolog
Names
grainyhead 3
grainyhead-like 3
transcription factor CP2-like 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095361.1 → NP_001088830.1  grainyhead-like protein 3 homolog

    See identical proteins and their annotated locations for NP_001088830.1

    Status: PROVISIONAL

    Source sequence(s)
    BC087619
    UniProtKB/Swiss-Prot
    Q5PPL8
    UniProtKB/TrEMBL
    A0A974DNR4
    Related
    ENSXLAP00005102996.1, ENSXLAT00005105000.1
    Conserved Domains (1) summary
    pfam04516
    Location:201 → 415
    CP2; CP2 transcription factor

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    57307243..57323355 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5PPL8.1 GenPept UniProtKB/Swiss-Prot:Q5PPL8

Gene LinkOut

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