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jarid2.L jumonji and AT-rich interaction domain containing 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495842, updated on 4-Nov-2024

Summary

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Official Symbol
jarid2.L
Official Full Name
jumonji and AT-rich interaction domain containing 2 L homeolog
Primary source
Xenbase:XB-GENE-6253203
Locus tag
XELAEV_18031684mg
See related
EnsemblRapid:ENSXLAG00005018249 AllianceGenome:Xenbase:XB-GENE-6253203
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
jmj; Jumonji; jarid2b; jarid2-a; jarid2-b; jarid2.S
Summary
Predicted to enable DNA binding activity. Predicted to act upstream of or within chromatin remodeling and regulation of gene expression. Predicted to be located in chromatin and nucleus. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human JARID2 (jumonji and AT-rich interaction domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See jarid2.L in Genome Data Viewer
Location:
chromosome: 6L
Exon count:
21
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (97641096..97783115)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (90881625..91023981)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene regulator of G-protein signaling 9-binding protein B L homeolog Neighboring gene ring finger protein 182 L homeolog Neighboring gene dystrobrevin binding protein 1 L homeolog Neighboring gene uncharacterized LOC121394870

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within chromatin organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within chromatin remodeling IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of gene expression IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chromatin IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
jumonji and AT-rich interaction domain containing 2 L homeolog; protein Jumonji
Names
jumonji and AT-rich interaction domain containing 2 S homeolog
jumonji, AT rich interactive domain 2 b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    97641096..97783115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018267806.2 → XP_018123295.1  protein Jumonji isoform X1

    UniProtKB/TrEMBL
    A0A1L8FY27, A0A974CNR9
    Related
    ENSXLAP00005054025.1, ENSXLAT00005055200.1

  2. XM_018267807.2 → XP_018123296.1  protein Jumonji isoform X2

    UniProtKB/TrEMBL
    A0A8J0VJQ7
    Related
    ENSXLAP00005053936.1, ENSXLAT00005055110.1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001095195.1: Suppressed sequence

    Description
    NM_001095195.1: This RefSeq was temporarily suppressed because the CDS is substantially shorter than homologs.
Nucleotide Protein Strain
Heading Accession and Version

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