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atp5mc1.L ATP synthase membrane subunit c locus 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495263, updated on 17-Aug-2024

Summary

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Official Symbol
atp5mc1.L
Official Full Name
ATP synthase membrane subunit c locus 1 L homeolog
Primary source
Xenbase:XB-GENE-5907977
Locus tag
XELAEV_18013576mg
See related
EnsemblRapid:ENSXLAG00005030137
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
atp5a; atp5g; atp5g1; atp5g1.L
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Genomic context

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See atp5mc1.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (154756283..154764893)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (148847096..148855879)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene homeobox C13 L homeolog Neighboring gene calcium binding and coiled-coil domain 1 L homeolog Neighboring gene activating transcription factor 7 L homeolog Neighboring gene neuropeptide FF-amide peptide precursor L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  
enables proton transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within proton motive force-driven ATP synthesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrial membrane IEA
Inferred from Electronic Annotation
more info
  
part_of proton-transporting ATP synthase complex, coupling factor F(o) IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ATP synthase membrane subunit c locus 1 L homeolog
Names
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)
ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) L homeolog
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094938.1 → NP_001088407.1  ATP synthase membrane subunit c locus 1 L homeolog

    See identical proteins and their annotated locations for NP_001088407.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084317
    UniProtKB/TrEMBL
    Q5XGW1
    Conserved Domains (1) summary
    MTH00222
    Location:56 → 130
    ATP9; ATP synthase F0 subunit 9; Provisional

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    154756283..154764893
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018245243.2 → XP_018100732.1  ATP synthase membrane subunit c locus 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8HIH0, A0A974DQ56
    Related
    ENSXLAP00005090128.1, ENSXLAT00005091804.1

  2. XM_018245244.2 → XP_018100733.1  ATP synthase membrane subunit c locus 1 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0UB69

  3. XM_018245246.2 → XP_018100735.1  ATP synthase membrane subunit c locus 1 L homeolog isoform X3

    UniProtKB/TrEMBL
    Q5XGW1

  4. XM_018245245.2 → XP_018100734.1  ATP synthase membrane subunit c locus 1 L homeolog isoform X3

    UniProtKB/TrEMBL
    Q5XGW1
Nucleotide Protein Strain
Heading Accession and Version

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