tcf15.L transcription factor 15 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: tcf15.L
Official Full Name: transcription factor 15 L homeolog
Primary source: Xenbase:XB-GENE-6252545
Locus tag: XELAEV_18043650mg
See related: EnsemblRapid:ENSXLAG00005031252 AllianceGenome:Xenbase:XB-GENE-6252545
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: tcf15; paraxis
Summary: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and protein dimerization activity. Predicted to act upstream of or within developmental process and regulation of transcription by RNA polymerase II. Is expressed in ectoderm; mesenchyme; mesoderm; musculoskeletal system; and nervous system. Orthologous to human TCF15 (transcription factor 15). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 9_10L

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10L	NC_054387.1 (18902650..18908196)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10L	NC_030740.1 (18543501..18548958)

Chromosome 9_10L - NC_054387.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

analysis of developmental expression of Xenopus paraxis
Title: Identification and developmental expression of Xenopus paraxis.
The molecular characterization of paraxis is reported inh the paraxialmesoderm and somites.
Title: Xenopus paraxis homologue shows novel domains of expression.

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info
enables protein dimerization activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within developmental process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: transcription factor 15 L homeolog

Names: paraxis-like protein; transcription factor 15 (basic helix-loop-helix) L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.