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elmo2 engulfment and cell motility 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 493485, updated on 5-Mar-2024

Summary

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Official Symbol
elmo2provided by Xenbase
Official Full Name
engulfment and cell motility 2provided by Xenbase
Primary source
Xenbase:XB-GENE-986985
See related
Ensembl:ENSXETG00000007361
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
ced12; ced-12; elmo-2
Orthologs
human mouse all
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Genomic context

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See elmo2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
24
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 10 NC_030686.2 (18652712..18687339, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 10 NC_030686.1 (14366248..14403604, complement)

Chromosome 10 - NC_030686.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100490365 Neighboring gene solute carrier family 35 (GDP-fucose transporter), member C2 Neighboring gene small nuclear ribonucleoprotein polypeptides B and B1 Neighboring gene zinc finger NFX1-type containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC89478

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within apoptotic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within phagocytosis IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
engulfment and cell motility protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008122.1 → NP_001008123.1  engulfment and cell motility protein 2

    See identical proteins and their annotated locations for NP_001008123.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081328
    UniProtKB/TrEMBL
    A0A6I8SKJ7, Q66IJ1
    Related
    ENSXETP00000092718.1, ENSXETT00000092314.2
    Conserved Domains (3) summary
    cd13359
    Location:539 → 668
    PH_ELMO1_CED-12; Engulfment and cell motility protein 1 pleckstrin homology (PH) domain
    pfam04727
    Location:295 → 474
    ELMO_CED12; ELMO/CED-12 family
    pfam11841
    Location:116 → 271
    DUF3361; Domain of unknown function (DUF3361)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030686.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    18652712..18687339 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012971679.3 → XP_012827133.1  engulfment and cell motility protein 2 isoform X1

    See identical proteins and their annotated locations for XP_012827133.1

    UniProtKB/TrEMBL
    A0A6I8S2K7, A0A6I8SKJ7
    Conserved Domains (3) summary
    cd13359
    Location:551 → 680
    PH_ELMO1_CED-12; Engulfment and cell motility protein 1 pleckstrin homology (PH) domain
    pfam04727
    Location:307 → 486
    ELMO_CED12; ELMO/CED-12 family
    pfam11841
    Location:116 → 283
    DUF3361; Domain of unknown function (DUF3361)

  2. XM_031894050.1 → XP_031749910.1  engulfment and cell motility protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A6I8SKJ7, Q66IJ1
    Conserved Domains (3) summary
    cd13359
    Location:539 → 668
    PH_ELMO1_CED-12; Engulfment and cell motility protein 1 pleckstrin homology (PH) domain
    pfam04727
    Location:295 → 474
    ELMO_CED12; ELMO/CED-12 family
    pfam11841
    Location:116 → 271
    DUF3361; Domain of unknown function (DUF3361)

  3. XM_012971676.3 → XP_012827130.1  engulfment and cell motility protein 2 isoform X1

    See identical proteins and their annotated locations for XP_012827130.1

    UniProtKB/TrEMBL
    A0A6I8S2K7, A0A6I8SKJ7
    Conserved Domains (3) summary
    cd13359
    Location:551 → 680
    PH_ELMO1_CED-12; Engulfment and cell motility protein 1 pleckstrin homology (PH) domain
    pfam04727
    Location:307 → 486
    ELMO_CED12; ELMO/CED-12 family
    pfam11841
    Location:116 → 283
    DUF3361; Domain of unknown function (DUF3361)

  4. XM_031894051.1 → XP_031749911.1  engulfment and cell motility protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A6I8SKJ7, A0A8J1IZJ4
    Conserved Domains (3) summary
    cd13359
    Location:483 → 612
    PH_ELMO1_CED-12; Engulfment and cell motility protein 1 pleckstrin homology (PH) domain
    pfam04727
    Location:239 → 418
    ELMO_CED12; ELMO/CED-12 family
    pfam11841
    Location:48 → 215
    DUF3361; Domain of unknown function (DUF3361)

  5. XM_012971678.2 → XP_012827132.1  engulfment and cell motility protein 2 isoform X1

    See identical proteins and their annotated locations for XP_012827132.1

    UniProtKB/TrEMBL
    A0A6I8S2K7, A0A6I8SKJ7
    Related
    ENSXETP00000091102.1, ENSXETT00000079335.2
    Conserved Domains (3) summary
    cd13359
    Location:551 → 680
    PH_ELMO1_CED-12; Engulfment and cell motility protein 1 pleckstrin homology (PH) domain
    pfam04727
    Location:307 → 486
    ELMO_CED12; ELMO/CED-12 family
    pfam11841
    Location:116 → 283
    DUF3361; Domain of unknown function (DUF3361)

  6. XM_012971677.3 → XP_012827131.1  engulfment and cell motility protein 2 isoform X1

    See identical proteins and their annotated locations for XP_012827131.1

    UniProtKB/TrEMBL
    A0A6I8S2K7, A0A6I8SKJ7
    Conserved Domains (3) summary
    cd13359
    Location:551 → 680
    PH_ELMO1_CED-12; Engulfment and cell motility protein 1 pleckstrin homology (PH) domain
    pfam04727
    Location:307 → 486
    ELMO_CED12; ELMO/CED-12 family
    pfam11841
    Location:116 → 283
    DUF3361; Domain of unknown function (DUF3361)

  7. XM_031894049.1 → XP_031749909.1  engulfment and cell motility protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A6I8S2K7, A0A6I8SKJ7
    Conserved Domains (3) summary
    cd13359
    Location:551 → 680
    PH_ELMO1_CED-12; Engulfment and cell motility protein 1 pleckstrin homology (PH) domain
    pfam04727
    Location:307 → 486
    ELMO_CED12; ELMO/CED-12 family
    pfam11841
    Location:116 → 283
    DUF3361; Domain of unknown function (DUF3361)

  8. XM_012971684.3 → XP_012827138.1  engulfment and cell motility protein 2 isoform X3

    See identical proteins and their annotated locations for XP_012827138.1

    UniProtKB/TrEMBL
    A0A6I8SKJ7, A0A8J1IZJ4
    Conserved Domains (3) summary
    cd13359
    Location:483 → 612
    PH_ELMO1_CED-12; Engulfment and cell motility protein 1 pleckstrin homology (PH) domain
    pfam04727
    Location:239 → 418
    ELMO_CED12; ELMO/CED-12 family
    pfam11841
    Location:48 → 215
    DUF3361; Domain of unknown function (DUF3361)
Nucleotide Protein Strain
Heading Accession and Version

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