U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ppm1b protein phosphatase, Mg2+/Mn2+ dependent 1B [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 493392, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
ppm1bprovided by Xenbase
Official Full Name
protein phosphatase, Mg2+/Mn2+ dependent 1Bprovided by Xenbase
Primary source
Xenbase:XB-GENE-999170
See related
Ensembl:ENSXETG00000002746
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
pp2cb; pp2cbeta; ppc2betax; pp2c-beta-x
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ppm1b in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (18658645..18686031)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (14763180..14788026)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily G member 8 Neighboring gene leucine rich pentatricopeptide repeat containing Neighboring gene solute carrier family 3 (amino acid transporter heavy chain), member 1 Neighboring gene prolyl endopeptidase-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC79542

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables myosin phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables phosphoprotein phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
protein phosphatase 1B
NP_001008030.1
XP_012818372.1
XP_012818373.1
XP_012818375.1
XP_017949345.1
XP_031757524.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008029.1 → NP_001008030.1  protein phosphatase 1B

    See identical proteins and their annotated locations for NP_001008030.1

    Status: PROVISIONAL

    Source sequence(s)
    BC080911
    UniProtKB/TrEMBL
    A0A6I8RP31, F6X8B4, Q66JH6
    Conserved Domains (2) summary
    cd00143
    Location:23 → 295
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
    pfam07830
    Location:289 → 365
    PP2C_C; Protein serine/threonine phosphatase 2C, C-terminal domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    18658645..18686031
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012962919.3 → XP_012818373.1  protein phosphatase 1B isoform X1

    See identical proteins and their annotated locations for XP_012818373.1

    UniProtKB/TrEMBL
    A0A8J0SMH4, F6RTH1
    Conserved Domains (2) summary
    cd00143
    Location:23 → 295
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
    pfam07830
    Location:289 → 365
    PP2C_C; Protein serine/threonine phosphatase 2C, C-terminal domain

  2. XM_018093856.2 → XP_017949345.1  protein phosphatase 1B isoform X1

    UniProtKB/TrEMBL
    A0A8J0SMH4, F6RTH1
    Conserved Domains (2) summary
    cd00143
    Location:23 → 295
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
    pfam07830
    Location:289 → 365
    PP2C_C; Protein serine/threonine phosphatase 2C, C-terminal domain

  3. XM_012962918.3 → XP_012818372.1  protein phosphatase 1B isoform X1

    See identical proteins and their annotated locations for XP_012818372.1

    UniProtKB/TrEMBL
    A0A8J0SMH4, F6RTH1
    Conserved Domains (2) summary
    cd00143
    Location:23 → 295
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
    pfam07830
    Location:289 → 365
    PP2C_C; Protein serine/threonine phosphatase 2C, C-terminal domain

  4. XM_031901664.1 → XP_031757524.1  protein phosphatase 1B isoform X2

    UniProtKB/TrEMBL
    A0A6I8QQC3, A0A803KHU9
    Related
    ENSXETP00000036930.4, ENSXETT00000036930.5
    Conserved Domains (2) summary
    cd00143
    Location:23 → 295
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
    pfam07830
    Location:289 → 368
    PP2C_C; Protein serine/threonine phosphatase 2C, C-terminal domain

  5. XM_012962921.3 → XP_012818375.1  protein phosphatase 1B isoform X3

    UniProtKB/TrEMBL
    A0A6I8RP31, A0A803JAJ1
    Related
    ENSXETP00000104914.1, ENSXETT00000116413.1
    Conserved Domains (2) summary
    cd00143
    Location:23 → 295
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
    pfam07830
    Location:289 → 365
    PP2C_C; Protein serine/threonine phosphatase 2C, C-terminal domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.