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bod1 biorientation of chromosomes in cell division 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 493221, updated on 4-Nov-2024

Summary

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Official Symbol
bod1provided by Xenbase
Official Full Name
biorientation of chromosomes in cell division 1provided by Xenbase
Primary source
Xenbase:XB-GENE-5810100
See related
Ensembl:ENSXETG00000022543 AllianceGenome:Xenbase:XB-GENE-5810100
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
fam44b
Summary
Predicted to act upstream of or within cell division. Predicted to be located in centrosome; cytoplasm; and kinetochore. Orthologous to several human genes including BOD1 (biorientation of chromosomes in cell division 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See bod1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (152360462..152381024)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683699.1 (249..15500)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene amily with sequence similarity 120 member A Neighboring gene histone deacetylase 11 Neighboring gene protein tyrosine phosphatase domain containing 1 Neighboring gene microRNA let-7e-1 Neighboring gene collagen alpha-1(III) chain-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC79537

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
  
located_in chromosome IEA
Inferred from Electronic Annotation
more info
  
located_in chromosome, centromeric region IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in kinetochore IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
biorientation of chromosomes in cell division protein 1
Names
biorientation defective protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007494.1 → NP_001007495.1  biorientation of chromosomes in cell division protein 1

    See identical proteins and their annotated locations for NP_001007495.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079931
    UniProtKB/Swiss-Prot
    Q28H68, Q68FB1
    UniProtKB/TrEMBL
    A0A1B8XZD9
    Conserved Domains (1) summary
    pfam05205
    Location:35 → 128
    COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    152360462..152381024
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031900018.1 → XP_031755878.1  biorientation of chromosomes in cell division protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q28H68, Q68FB1
    UniProtKB/TrEMBL
    A0A1B8XZD9
    Related
    ENSXETP00000111682.1, ENSXETT00000116856.1
    Conserved Domains (1) summary
    pfam05205
    Location:35 → 128
    COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1

  2. XM_012954581.3 → XP_012810035.1  biorientation of chromosomes in cell division protein 1 isoform X1

    See identical proteins and their annotated locations for XP_012810035.1

    UniProtKB/Swiss-Prot
    Q28H68, Q68FB1
    UniProtKB/TrEMBL
    A0A1B8XZD9
    Related
    ENSXETP00000118853.1, ENSXETT00000112481.1
    Conserved Domains (1) summary
    pfam05205
    Location:35 → 128
    COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1

  3. XM_012954583.3 → XP_012810037.1  biorientation of chromosomes in cell division protein 1 isoform X1

    See identical proteins and their annotated locations for XP_012810037.1

    UniProtKB/Swiss-Prot
    Q28H68, Q68FB1
    UniProtKB/TrEMBL
    A0A1B8XZD9
    Related
    ENSXETP00000115648.1, ENSXETT00000118161.1
    Conserved Domains (1) summary
    pfam05205
    Location:35 → 128
    COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1

  4. XM_012954582.3 → XP_012810036.1  biorientation of chromosomes in cell division protein 1 isoform X1

    See identical proteins and their annotated locations for XP_012810036.1

    UniProtKB/Swiss-Prot
    Q28H68, Q68FB1
    UniProtKB/TrEMBL
    A0A1B8XZD9
    Related
    ENSXETP00000048799.3, ENSXETT00000048799.5
    Conserved Domains (1) summary
    pfam05205
    Location:35 → 128
    COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q68FB1.1 GenPept UniProtKB/Swiss-Prot:Q68FB1

Gene LinkOut

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