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KRT16 keratin 16 [ Canis lupus familiaris (dog) ]

Gene ID: 490978, updated on 17-Aug-2024

Summary

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Official Symbol
KRT16provided by VGNC
Official Full Name
keratin 16provided by VGNC
Primary source
VGNC:VGNC:83235
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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Genomic context

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See KRT16 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (21888353..21891277)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (20629227..20632151)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (21044181..21047105)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (20674381..20677305)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (20940386..20943310)

Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene keratin 42 Neighboring gene keratin 17 Neighboring gene keratin 14 Neighboring gene keratin 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A spontaneous KRT16 mutation in a dog breed: a model for human focal non-epidermolytic palmoplantar keratoderma (FNEPPK). Plassais J, et al. J Invest Dermatol, 2015 Apr. PMID 25521457
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. the KRT16 mutation in dogs is a model for human focal non-epidermolytic palmoplantar keratoderma (FNEPPK)
    Title: A spontaneous KRT16 mutation in a dog breed: a model for human focal non-epidermolytic palmoplantar keratoderma (FNEPPK).
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
keratin, type I cytoskeletal 14; keratin, type I cytoskeletal 16
Names
keratin 16 (focal non-epidermolytic palmoplantar keratoderma)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051813.1 Reference ROS_Cfam_1.0

    Range
    21888353..21891277
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038676521.1 → XP_038532449.1  keratin, type I cytoskeletal 16

    UniProtKB/TrEMBL
    A0A8C0L105
    Conserved Domains (1) summary
    pfam00038
    Location:117 → 428
    Filament; Intermediate filament protein

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049269.1 Alternate UMICH_Zoey_3.1

    Range
    20674381..20677305
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038485583.1 → XP_038341511.1  keratin, type I cytoskeletal 16

    Conserved Domains (1) summary
    pfam00038
    Location:117 → 428
    Filament; Intermediate filament protein

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

    Range
    20940386..20943310
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038611326.1 → XP_038467254.1  keratin, type I cytoskeletal 16

    Conserved Domains (1) summary
    pfam00038
    Location:117 → 428
    Filament; Intermediate filament protein

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

    Range
    21044181..21047105
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038547352.1 → XP_038403280.1  keratin, type I cytoskeletal 16

    UniProtKB/TrEMBL
    A0A8C0L105
    Conserved Domains (1) summary
    pfam00038
    Location:117 → 428
    Filament; Intermediate filament protein

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    20629227..20632151
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_548101.5 → XP_548101.3  keratin, type I cytoskeletal 16

    UniProtKB/TrEMBL
    A0A8C0L105
    Conserved Domains (1) summary
    pfam00038
    Location:117 → 428
    Filament; Intermediate filament protein
Nucleotide Protein
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