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LOC489707 carbohydrate sulfotransferase 6 [ Canis lupus familiaris (dog) ]

Gene ID: 489707, updated on 22-Jan-2024

Summary

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Gene symbol
LOC489707
Gene description
carbohydrate sulfotransferase 6
See related
Ensembl:ENSCAFG00845023942
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
CHST6
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Genomic context

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See LOC489707 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (75580429..75594782)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (75243924..75257918)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (75842944..75856924)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (75516316..75530593)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (75351643..75365789)

Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene adenosine deaminase tRNA specific 1 Neighboring gene GABA type A receptor associated protein like 2 Neighboring gene transmembrane protein 231 Neighboring gene transmembrane protein 170A Neighboring gene craniofacial development protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 5; carbohydrate sulfotransferase 6
Names
carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6
XP_005620742.1
XP_005620743.1
XP_005620744.1
XP_005620745.1
XP_005620747.1
XP_022274887.1
XP_022274888.1
XP_038333025.1
XP_038333026.1
XP_038333027.1
XP_038333028.1
XP_038333029.1
XP_038333030.1
XP_038333031.1
XP_038333032.1
XP_038383277.1
XP_038394213.1
XP_038394214.1
XP_038394215.1
XP_038394216.1
XP_038394217.1
XP_038394218.1
XP_038394219.1
XP_038394220.1
XP_038458336.1
XP_038458337.1
XP_038458338.1
XP_038458339.1
XP_038458340.1
XP_038458341.1
XP_038458342.1
XP_038458343.1
XP_038522941.1
XP_038522942.1
XP_038522943.1
XP_038522944.1
XP_038522945.1
XP_038522946.1
XP_038522947.1
XP_038522948.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051809.1 Reference ROS_Cfam_1.0

    Range
    75580429..75594782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038667017.1 → XP_038522945.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  2. XM_038667020.1 → XP_038522948.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Related
    ENSCAFP00845033132.1, ENSCAFT00845042259.1
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  3. XM_038667019.1 → XP_038522947.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  4. XM_038667015.1 → XP_038522943.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  5. XM_038667016.1 → XP_038522944.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  6. XM_038667013.1 → XP_038522941.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  7. XM_038667018.1 → XP_038522946.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  8. XM_038667014.1 → XP_038522942.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049265.1 Alternate UMICH_Zoey_3.1

    Range
    75516316..75530593
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038477101.1 → XP_038333029.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  2. XM_038477104.1 → XP_038333032.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  3. XM_038477103.1 → XP_038333031.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  4. XM_038477099.1 → XP_038333027.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  5. XM_038477100.1 → XP_038333028.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  6. XM_038477097.1 → XP_038333025.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  7. XM_038477102.1 → XP_038333030.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  8. XM_038477098.1 → XP_038333026.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

    Range
    75351643..75365789
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038602412.1 → XP_038458340.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  2. XM_038602415.1 → XP_038458343.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  3. XM_038602414.1 → XP_038458342.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  4. XM_038602410.1 → XP_038458338.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  5. XM_038602411.1 → XP_038458339.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  6. XM_038602408.1 → XP_038458336.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  7. XM_038602413.1 → XP_038458341.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  8. XM_038602409.1 → XP_038458337.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

    Range
    75842944..75856924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038538289.1 → XP_038394217.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  2. XM_038538292.1 → XP_038394220.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  3. XM_038538291.1 → XP_038394219.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  4. XM_038538287.1 → XP_038394215.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  5. XM_038538288.1 → XP_038394216.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  6. XM_038538285.1 → XP_038394213.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  7. XM_038538290.1 → XP_038394218.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  8. XM_038538286.1 → XP_038394214.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    75243924..75257918
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022419180.2 → XP_022274888.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  2. XM_022419179.2 → XP_022274887.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  3. XM_005620686.2 → XP_005620743.1  carbohydrate sulfotransferase 6

    See identical proteins and their annotated locations for XP_005620743.1

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  4. XM_005620688.2 → XP_005620745.1  carbohydrate sulfotransferase 6

    See identical proteins and their annotated locations for XP_005620745.1

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  5. XM_005620690.3 → XP_005620747.1  carbohydrate sulfotransferase 6

    See identical proteins and their annotated locations for XP_005620747.1

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  6. XM_005620685.3 → XP_005620742.1  carbohydrate sulfotransferase 6

    See identical proteins and their annotated locations for XP_005620742.1

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  7. XM_038527349.1 → XP_038383277.1  carbohydrate sulfotransferase 6

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  8. XM_005620687.3 → XP_005620744.1  carbohydrate sulfotransferase 6

    See identical proteins and their annotated locations for XP_005620744.1

    UniProtKB/TrEMBL
    A0A8C0JMM1, A0A8C0M2F2, A0A8I3PK22
    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
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