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BBS4 Bardet-Biedl syndrome 4 [ Canis lupus familiaris (dog) ]

Gene ID: 487634, updated on 5-Mar-2024

Summary

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Gene symbol
BBS4
Gene description
Bardet-Biedl syndrome 4
See related
Ensembl:ENSCAFG00845025503
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See BBS4 in Genome Data Viewer
Location:
chromosome: 30
Exon count:
16
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 30 NC_051834.1 (36258709..36315967)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 30 NC_006612.4 (35988900..36045202)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 30 NC_049251.1 (36493119..36550621)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 30 NC_049290.1 (36211087..36268605)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 30 NC_049771.1 (36237290..36294633)

Chromosome 30 - NC_051834.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119866936 Neighboring gene uncharacterized LOC102156741 Neighboring gene U6 spliceosomal RNA Neighboring gene ariadne RBR E3 ubiquitin protein ligase 1 Neighboring gene ADP dependent glucokinase Neighboring gene uncharacterized LOC111093401

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Coding Variant in the Gene Bardet-Biedl Syndrome 4 (BBS4) Is Associated with a Novel Form of Canine Progressive Retinal Atrophy. Chew T, et al. G3 (Bethesda), 2017 Jul 5. PMID 28533336, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Bardet-Biedl syndrome 4 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051834.1 Reference ROS_Cfam_1.0

    Range
    36258709..36315967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038442882.1 → XP_038298810.1  Bardet-Biedl syndrome 4 protein

    UniProtKB/TrEMBL
    A0A173GVZ9, A0A8C0SXG9
    Related
    ENSCAFP00845035405.1, ENSCAFT00845045155.1
    Conserved Domains (2) summary
    TIGR02917
    Location:69 → 393
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:101 → 129
    TPR; TPR repeat [structural motif]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049290.1 Alternate UMICH_Zoey_3.1

    Range
    36211087..36268605
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038517318.1 → XP_038373246.1  Bardet-Biedl syndrome 4 protein

    Conserved Domains (2) summary
    TIGR02917
    Location:69 → 393
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:101 → 129
    TPR; TPR repeat [structural motif]

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049771.1 Alternate UNSW_CanFamBas_1.0

    Range
    36237290..36294633
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038645275.1 → XP_038501203.1  Bardet-Biedl syndrome 4 protein

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049251.1 Alternate UU_Cfam_GSD_1.0

    Range
    36493119..36550621
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038580912.1 → XP_038436840.1  Bardet-Biedl syndrome 4 protein

    UniProtKB/TrEMBL
    A0A173GVZ9, A0A8C0SXG9
    Conserved Domains (2) summary
    TIGR02917
    Location:69 → 393
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:101 → 129
    TPR; TPR repeat [structural motif]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006612.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    35988900..36045202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038461633.1 → XP_038317561.1  Bardet-Biedl syndrome 4 protein

    UniProtKB/TrEMBL
    A0A173GVZ9
    Conserved Domains (2) summary
    TIGR02917
    Location:69 → 393
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:101 → 129
    TPR; TPR repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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