SNTG1 syntrophin gamma 1 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: SNTG1provided by VGNC
Official Full Name: syntrophin gamma 1provided by VGNC
Primary source: VGNC:VGNC:46615
See related: Ensembl:ENSCAFG00845028965
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 29

Exon count:: 22

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	29	NC_051833.1 (2056582..2879126)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	29	NC_006611.4 (2427062..3256355)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	29	NC_049250.1 (2298045..3111263)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	29	NC_049289.1 (1998582..2812831)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	29	NC_049770.1 (2225602..3043266)

Chromosome 29 - NC_051833.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

FH2952 (e-PCR)
- UniSTS:263696

BAC_385-D19 (e-PCR)
- UniSTS:262686

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed
enables structural molecule activity	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of dystrophin-associated glycoprotein complex	IEA Inferred from Electronic Annotation more info	PubMed
located_in intracellular anatomical structure	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: gamma-1-syntrophin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051833.1 Reference ROS_Cfam_1.0

Range

2056582..2879126

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038441141.1 → XP_038297069.1 gamma-1-syntrophin isoform X1

UniProtKB/TrEMBL

A0A8C0PLV3

Conserved Domains (2) summary

smart00233
Location:297 → 402

PH; Pleckstrin homology domain

cd00992
Location:55 → 136

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
XM_038441142.1 → XP_038297070.1 gamma-1-syntrophin isoform X1

UniProtKB/TrEMBL

A0A8C0PLV3

Conserved Domains (2) summary

smart00233
Location:297 → 402

PH; Pleckstrin homology domain

cd00992
Location:55 → 136

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
XM_038441143.1 → XP_038297071.1 gamma-1-syntrophin isoform X2

UniProtKB/TrEMBL

A0A8C0PLV3, A0A8C0TRB3, A0A8I3Q579

Related

ENSCAFP00845040263.1, ENSCAFT00845051329.1

Conserved Domains (2) summary

smart00233
Location:284 → 389

PH; Pleckstrin homology domain

cd00992
Location:55 → 136

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RNA

XR_005304124.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

NC_049289.1 Alternate UMICH_Zoey_3.1

Range

1998582..2812831

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038515709.1 → XP_038371637.1 gamma-1-syntrophin isoform X1

Conserved Domains (2) summary

smart00233
Location:297 → 402

PH; Pleckstrin homology domain

cd00992
Location:55 → 136

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
XM_038515710.1 → XP_038371638.1 gamma-1-syntrophin isoform X1

Conserved Domains (2) summary

smart00233
Location:297 → 402

PH; Pleckstrin homology domain

cd00992
Location:55 → 136

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
XM_038515711.1 → XP_038371639.1 gamma-1-syntrophin isoform X2

Conserved Domains (2) summary

smart00233
Location:284 → 389

PH; Pleckstrin homology domain

cd00992
Location:55 → 136

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RNA

XR_005347182.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049770.1 Alternate UNSW_CanFamBas_1.0

Range

2225602..3043266

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038643513.1 → XP_038499441.1 gamma-1-syntrophin isoform X1

Conserved Domains (2) summary

smart00233
Location:297 → 402

PH; Pleckstrin homology domain

cd00992
Location:55 → 136

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
XM_038643514.1 → XP_038499442.1 gamma-1-syntrophin isoform X1

Conserved Domains (2) summary

smart00233
Location:297 → 402

PH; Pleckstrin homology domain

cd00992
Location:55 → 136

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
XM_038643515.1 → XP_038499443.1 gamma-1-syntrophin isoform X2

Conserved Domains (2) summary

smart00233
Location:284 → 389

PH; Pleckstrin homology domain

cd00992
Location:55 → 136

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RNA

XR_005414739.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049250.1 Alternate UU_Cfam_GSD_1.0

Range

2298045..3111263

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038579273.1 → XP_038435201.1 gamma-1-syntrophin isoform X1

UniProtKB/TrEMBL

A0A8C0PLV3

Conserved Domains (2) summary

smart00233
Location:297 → 402

PH; Pleckstrin homology domain

cd00992
Location:55 → 136

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
XM_038579274.1 → XP_038435202.1 gamma-1-syntrophin isoform X1

UniProtKB/TrEMBL

A0A8C0PLV3

Conserved Domains (2) summary

smart00233
Location:297 → 402

PH; Pleckstrin homology domain

cd00992
Location:55 → 136

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
XM_038579275.1 → XP_038435203.1 gamma-1-syntrophin isoform X2

UniProtKB/TrEMBL

A0A8C0PLV3, A0A8C0TRB3, A0A8I3Q579

Conserved Domains (2) summary

smart00233
Location:284 → 389

PH; Pleckstrin homology domain

cd00992
Location:55 → 136

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RNA

XR_005380942.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006611.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

2427062..3256355

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_022412367.2 → XP_022268075.1 gamma-1-syntrophin isoform X1

UniProtKB/TrEMBL

A0A8C0PLV3

Conserved Domains (2) summary

smart00233
Location:297 → 402

PH; Pleckstrin homology domain

cd00992
Location:55 → 136

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
XM_038460998.1 → XP_038316926.1 gamma-1-syntrophin isoform X1

UniProtKB/TrEMBL

A0A8C0PLV3

Conserved Domains (2) summary

smart00233
Location:297 → 402

PH; Pleckstrin homology domain

cd00992
Location:55 → 136

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
XM_038460999.1 → XP_038316927.1 gamma-1-syntrophin isoform X2

UniProtKB/TrEMBL

A0A8C0PLV3, A0A8C0TRB3, A0A8I3Q579

Conserved Domains (2) summary

smart00233
Location:284 → 389

PH; Pleckstrin homology domain

cd00992
Location:55 → 136

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...