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TSEN54 tRNA splicing endonuclease subunit 54 [ Canis lupus familiaris (dog) ]

Gene ID: 483315, updated on 17-Aug-2024

Summary

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Official Symbol
TSEN54provided by VGNC
Official Full Name
tRNA splicing endonuclease subunit 54provided by VGNC
Primary source
VGNC:VGNC:47897
See related
Ensembl:ENSCAFG00845026641
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See TSEN54 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (5679689..5686738, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (5688912..5695957, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (5890068..5897113, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (5718818..5725861, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (5828988..5836007, complement)

Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene myosin XVB Neighboring gene LLGL scribble cell polarity complex component 2 Neighboring gene CASK interacting protein 2 Neighboring gene transmembrane protein 94 Neighboring gene uncharacterized LOC111097294 Neighboring gene uncharacterized LOC119873225 Neighboring gene growth factor receptor bound protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TSEN54 missense variant in Standard Schnauzers with leukodystrophy. Störk T, et al. PLoS Genet, 2019 Oct. PMID 31584937, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in tRNA-type intron splice site recognition and cleavage IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of tRNA-intron endonuclease complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA-splicing endonuclease subunit Sen54
Names
tRNA splicing endonuclease 54 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051813.1 Reference ROS_Cfam_1.0

    Range
    5679689..5686738 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038675737.1 → XP_038531665.1  tRNA-splicing endonuclease subunit Sen54 isoform X2

    Conserved Domains (2) summary
    pfam12928
    Location:63 → 130
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term
    cl40623
    Location:116 → 189
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term

  2. XM_038675736.1 → XP_038531664.1  tRNA-splicing endonuclease subunit Sen54 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JJ85, A0A8C0RC07, A0A8I3PTG1
    Related
    ENSCAFP00845036872.1, ENSCAFT00845046991.1
    Conserved Domains (2) summary
    pfam12928
    Location:63 → 130
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term
    cl40623
    Location:116 → 189
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049269.1 Alternate UMICH_Zoey_3.1

    Range
    5718818..5725861 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038484927.1 → XP_038340855.1  tRNA-splicing endonuclease subunit Sen54 isoform X2

    Conserved Domains (2) summary
    pfam12928
    Location:63 → 130
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term
    cl40623
    Location:116 → 189
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term

  2. XM_038484926.1 → XP_038340854.1  tRNA-splicing endonuclease subunit Sen54 isoform X1

    Conserved Domains (2) summary
    pfam12928
    Location:63 → 130
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term
    cl40623
    Location:116 → 189
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

    Range
    5828988..5836007 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038610608.1 → XP_038466536.1  tRNA-splicing endonuclease subunit Sen54 isoform X3

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

    Range
    5890068..5897113 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038546615.1 → XP_038402543.1  tRNA-splicing endonuclease subunit Sen54 isoform X2

    Conserved Domains (2) summary
    pfam12928
    Location:63 → 130
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term
    cl40623
    Location:116 → 189
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term

  2. XM_038546614.1 → XP_038402542.1  tRNA-splicing endonuclease subunit Sen54 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JJ85, A0A8C0RC07, A0A8I3PTG1
    Conserved Domains (2) summary
    pfam12928
    Location:63 → 130
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term
    cl40623
    Location:116 → 189
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    5688912..5695957 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022422730.1 → XP_022278438.1  tRNA-splicing endonuclease subunit Sen54 isoform X2

    Conserved Domains (2) summary
    pfam12928
    Location:63 → 130
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term
    cl40623
    Location:116 → 189
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term

  2. XM_540434.7 → XP_540434.3  tRNA-splicing endonuclease subunit Sen54 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JJ85, A0A8C0RC07, A0A8I3PTG1
    Conserved Domains (2) summary
    pfam12928
    Location:63 → 130
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term
    cl40623
    Location:116 → 189
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term
Nucleotide Protein
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