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FAM83H family with sequence similarity 83 member H [ Canis lupus familiaris (dog) ]

Gene ID: 482081, updated on 17-Aug-2024

Summary

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Official Symbol
FAM83Hprovided by VGNC
Official Full Name
family with sequence similarity 83 member Hprovided by VGNC
Primary source
VGNC:VGNC:40705
See related
Ensembl:ENSCAFG00845016203
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See FAM83H in Genome Data Viewer
Location:
chromosome: 13
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 13 NC_051817.1 (37796064..37804968, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 13 NC_006595.4 (37282087..37286695, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 13 NC_049234.1 (38069876..38074484, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 13 NC_049273.1 (37471655..37476262, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 13 NC_049754.1 (37588547..37593155, complement)

Chromosome 13 - NC_051817.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 166 Neighboring gene mitogen-activated protein kinase 15 Neighboring gene IQ motif and ankyrin repeat containing 1 Neighboring gene scribble planar cell polarity protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Parallel mapping and simultaneous sequencing reveals deletions in BCAN and FAM83H associated with discrete inherited disorders in a domestic dog breed. Forman OP, et al. PLoS Genet, 2012 Jan. PMID 22253609, Free PMC Article
  2. Light-activated BioID - an optically activated proximity labeling system to study protein-protein interactions. Shafraz O, et al. J Cell Sci, 2023 Oct 1. PMID 37756605, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables keratin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein FAM83H

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001289427.1 → NP_001276356.1  protein FAM83H

    See identical proteins and their annotated locations for NP_001276356.1

    Status: VALIDATED

    Source sequence(s)
    JN968466
    UniProtKB/TrEMBL
    A0A8C0L226, A0A8C0SDQ2, A0A8P0NSK8, H6VX52
    Conserved Domains (3) summary
    cd09188
    Location:17 → 281
    PLDc_FAM83H_N; N-terminal phospholipase D-like domain of the uncharacterized protein, Family with sequence similarity 83H
    PHA03247
    Location:458 → 898
    PHA03247; large tegument protein UL36; Provisional
    PRK14971
    Location:784 → 977
    PRK14971; DNA polymerase III subunit gamma/tau

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051817.1 Reference ROS_Cfam_1.0

    Range
    37796064..37804968 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038684539.1 → XP_038540467.1  protein FAM83H isoform X1

    UniProtKB/TrEMBL
    A0A8C0L226, A0A8C0SDQ2, A0A8P0NSK8, H6VX52
    Related
    ENSCAFP00845022681.1, ENSCAFT00845028824.1
    Conserved Domains (3) summary
    cd09188
    Location:17 → 281
    PLDc_FAM83H_N; N-terminal phospholipase D-like domain of the uncharacterized protein, Family with sequence similarity 83H
    PHA03247
    Location:458 → 898
    PHA03247; large tegument protein UL36; Provisional
    PRK14971
    Location:784 → 977
    PRK14971; DNA polymerase III subunit gamma/tau

  2. XM_038684540.1 → XP_038540468.1  protein FAM83H isoform X1

    UniProtKB/TrEMBL
    A0A8C0L226, A0A8C0SDQ2, A0A8P0NSK8, H6VX52
    Conserved Domains (3) summary
    cd09188
    Location:17 → 281
    PLDc_FAM83H_N; N-terminal phospholipase D-like domain of the uncharacterized protein, Family with sequence similarity 83H
    PHA03247
    Location:458 → 898
    PHA03247; large tegument protein UL36; Provisional
    PRK14971
    Location:784 → 977
    PRK14971; DNA polymerase III subunit gamma/tau

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049273.1 Alternate UMICH_Zoey_3.1

    Range
    37471655..37476262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049754.1 Alternate UNSW_CanFamBas_1.0

    Range
    37588547..37593155 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049234.1 Alternate UU_Cfam_GSD_1.0

    Range
    38069876..38074484 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006595.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    37282087..37286695 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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