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VPS13B vacuolar protein sorting 13 homolog B [ Canis lupus familiaris (dog) ]

Gene ID: 481981, updated on 17-Aug-2024

Summary

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Official Symbol
VPS13Bprovided by VGNC
Official Full Name
vacuolar protein sorting 13 homolog Bprovided by VGNC
Primary source
VGNC:VGNC:48275
See related
Ensembl:ENSCAFG00845025516
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See VPS13B in Genome Data Viewer
Location:
chromosome: 13
Exon count:
69
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 13 NC_051817.1 (1253509..1988060)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 13 NC_006595.4 (1096682..1830492)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 13 NC_049234.1 (1210806..1944933)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 13 NC_049273.1 (1096002..1830212)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 13 NC_049754.1 (1203819..1943474)

Chromosome 13 - NC_051817.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119865383 Neighboring gene uncharacterized LOC111098490 Neighboring gene U2 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC119865384 Neighboring gene microRNA mir-599 Neighboring gene microRNA mir-875 Neighboring gene proline-rich protein 3-like Neighboring gene cytochrome c oxidase subunit 6C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 13B
Names
vesicle protein sorting 13 B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051817.1 Reference ROS_Cfam_1.0

    Range
    1253509..1988060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038684683.1 → XP_038540611.1  vacuolar protein sorting-associated protein 13B isoform X7

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  2. XM_038684682.1 → XP_038540610.1  vacuolar protein sorting-associated protein 13B isoform X6

    UniProtKB/TrEMBL
    A0A8C0N9T5
    Conserved Domains (2) summary
    pfam06650
    Location:2628 → 2820
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  3. XM_038684684.1 → XP_038540612.1  vacuolar protein sorting-associated protein 13B isoform X8

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  4. XM_038684685.1 → XP_038540613.1  vacuolar protein sorting-associated protein 13B isoform X9

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  5. XM_038684686.1 → XP_038540614.1  vacuolar protein sorting-associated protein 13B isoform X10

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  6. XM_038684687.1 → XP_038540615.1  vacuolar protein sorting-associated protein 13B isoform X11

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  7. XM_038684676.1 → XP_038540604.1  vacuolar protein sorting-associated protein 13B isoform X1

    UniProtKB/TrEMBL
    A0A8C0RJG9, A0A8I3PR92
    Conserved Domains (4) summary
    pfam06650
    Location:2628 → 2820
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3741 → 3834
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3582 → 3728
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  8. XM_038684677.1 → XP_038540605.1  vacuolar protein sorting-associated protein 13B isoform X1

    UniProtKB/TrEMBL
    A0A8C0RJG9, A0A8I3PR92
    Related
    ENSCAFP00845035390.1, ENSCAFT00845045136.1
    Conserved Domains (4) summary
    pfam06650
    Location:2628 → 2820
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3741 → 3834
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3582 → 3728
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  9. XM_038684679.1 → XP_038540607.1  vacuolar protein sorting-associated protein 13B isoform X3

    UniProtKB/TrEMBL
    A0A8C0RJG9
    Conserved Domains (4) summary
    pfam06650
    Location:2627 → 2819
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3740 → 3833
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3581 → 3727
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  10. XM_038684678.1 → XP_038540606.1  vacuolar protein sorting-associated protein 13B isoform X2

    UniProtKB/TrEMBL
    A0A8C0RJG9
    Conserved Domains (4) summary
    pfam06650
    Location:2627 → 2819
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3740 → 3833
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3581 → 3727
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  11. XM_038684681.1 → XP_038540609.1  vacuolar protein sorting-associated protein 13B isoform X5

    UniProtKB/TrEMBL
    A0A8C0NCH4
    Conserved Domains (4) summary
    pfam06650
    Location:2580 → 2772
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3693 → 3786
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 49
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3534 → 3680
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  12. XM_038684680.1 → XP_038540608.1  vacuolar protein sorting-associated protein 13B isoform X4

    UniProtKB/TrEMBL
    A0A8C0N699, A0A8I3Q867
    Related
    ENSCAFP00845035847.1, ENSCAFT00845045682.1
    Conserved Domains (4) summary
    pfam06650
    Location:2603 → 2795
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3716 → 3809
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3557 → 3703
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  13. XM_038684675.1 → XP_038540603.1  vacuolar protein sorting-associated protein 13B isoform X1

    UniProtKB/TrEMBL
    A0A8C0RJG9, A0A8I3PR92
    Conserved Domains (4) summary
    pfam06650
    Location:2628 → 2820
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3741 → 3834
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3582 → 3728
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

RNA

  1. XR_005436190.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049273.1 Alternate UMICH_Zoey_3.1

    Range
    1096002..1830212
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038492901.1 → XP_038348829.1  vacuolar protein sorting-associated protein 13B isoform X7

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  2. XM_038492900.1 → XP_038348828.1  vacuolar protein sorting-associated protein 13B isoform X6

    Conserved Domains (2) summary
    pfam06650
    Location:2628 → 2820
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  3. XM_038492902.1 → XP_038348830.1  vacuolar protein sorting-associated protein 13B isoform X8

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  4. XM_038492903.1 → XP_038348831.1  vacuolar protein sorting-associated protein 13B isoform X9

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  5. XM_038492904.1 → XP_038348832.1  vacuolar protein sorting-associated protein 13B isoform X10

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  6. XM_038492905.1 → XP_038348833.1  vacuolar protein sorting-associated protein 13B isoform X11

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  7. XM_038492894.1 → XP_038348822.1  vacuolar protein sorting-associated protein 13B isoform X1

    Conserved Domains (4) summary
    pfam06650
    Location:2628 → 2820
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3741 → 3834
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3582 → 3728
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  8. XM_038492895.1 → XP_038348823.1  vacuolar protein sorting-associated protein 13B isoform X1

    Conserved Domains (4) summary
    pfam06650
    Location:2628 → 2820
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3741 → 3834
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3582 → 3728
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  9. XM_038492897.1 → XP_038348825.1  vacuolar protein sorting-associated protein 13B isoform X3

    Conserved Domains (4) summary
    pfam06650
    Location:2627 → 2819
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3740 → 3833
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3581 → 3727
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  10. XM_038492896.1 → XP_038348824.1  vacuolar protein sorting-associated protein 13B isoform X2

    Conserved Domains (4) summary
    pfam06650
    Location:2627 → 2819
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3740 → 3833
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3581 → 3727
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  11. XM_038492899.1 → XP_038348827.1  vacuolar protein sorting-associated protein 13B isoform X5

    Conserved Domains (4) summary
    pfam06650
    Location:2580 → 2772
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3693 → 3786
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 49
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3534 → 3680
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  12. XM_038492898.1 → XP_038348826.1  vacuolar protein sorting-associated protein 13B isoform X4

    Conserved Domains (4) summary
    pfam06650
    Location:2603 → 2795
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3716 → 3809
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3557 → 3703
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  13. XM_038492893.1 → XP_038348821.1  vacuolar protein sorting-associated protein 13B isoform X1

    Conserved Domains (4) summary
    pfam06650
    Location:2628 → 2820
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3741 → 3834
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3582 → 3728
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

RNA

  1. XR_005334691.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049754.1 Alternate UNSW_CanFamBas_1.0

    Range
    1203819..1943474
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038619061.1 → XP_038474989.1  vacuolar protein sorting-associated protein 13B isoform X7

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  2. XM_038619060.1 → XP_038474988.1  vacuolar protein sorting-associated protein 13B isoform X6

  3. XM_038619062.1 → XP_038474990.1  vacuolar protein sorting-associated protein 13B isoform X8

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  4. XM_038619063.1 → XP_038474991.1  vacuolar protein sorting-associated protein 13B isoform X9

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  5. XM_038619064.1 → XP_038474992.1  vacuolar protein sorting-associated protein 13B isoform X10

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  6. XM_038619065.1 → XP_038474993.1  vacuolar protein sorting-associated protein 13B isoform X11

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  7. XM_038619054.1 → XP_038474982.1  vacuolar protein sorting-associated protein 13B isoform X1

  8. XM_038619055.1 → XP_038474983.1  vacuolar protein sorting-associated protein 13B isoform X1

  9. XM_038619057.1 → XP_038474985.1  vacuolar protein sorting-associated protein 13B isoform X3

  10. XM_038619056.1 → XP_038474984.1  vacuolar protein sorting-associated protein 13B isoform X2

  11. XM_038619059.1 → XP_038474987.1  vacuolar protein sorting-associated protein 13B isoform X5

  12. XM_038619058.1 → XP_038474986.1  vacuolar protein sorting-associated protein 13B isoform X4

  13. XM_038619053.1 → XP_038474981.1  vacuolar protein sorting-associated protein 13B isoform X1

RNA

  1. XR_005402741.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049234.1 Alternate UU_Cfam_GSD_1.0

    Range
    1210806..1944933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038555171.1 → XP_038411099.1  vacuolar protein sorting-associated protein 13B isoform X7

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  2. XM_038555170.1 → XP_038411098.1  vacuolar protein sorting-associated protein 13B isoform X6

    UniProtKB/TrEMBL
    A0A8C0N9T5
    Conserved Domains (2) summary
    pfam06650
    Location:2628 → 2820
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  3. XM_038555172.1 → XP_038411100.1  vacuolar protein sorting-associated protein 13B isoform X8

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  4. XM_038555173.1 → XP_038411101.1  vacuolar protein sorting-associated protein 13B isoform X9

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  5. XM_038555174.1 → XP_038411102.1  vacuolar protein sorting-associated protein 13B isoform X10

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  6. XM_038555175.1 → XP_038411103.1  vacuolar protein sorting-associated protein 13B isoform X11

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  7. XM_038555164.1 → XP_038411092.1  vacuolar protein sorting-associated protein 13B isoform X1

    UniProtKB/TrEMBL
    A0A8C0RJG9, A0A8C0SL38, A0A8P0N3S8
    Conserved Domains (4) summary
    pfam06650
    Location:2628 → 2820
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3741 → 3834
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3582 → 3728
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  8. XM_038555165.1 → XP_038411093.1  vacuolar protein sorting-associated protein 13B isoform X1

    UniProtKB/TrEMBL
    A0A8C0RJG9, A0A8C0SL38, A0A8P0N3S8
    Conserved Domains (4) summary
    pfam06650
    Location:2628 → 2820
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3741 → 3834
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3582 → 3728
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  9. XM_038555167.1 → XP_038411095.1  vacuolar protein sorting-associated protein 13B isoform X3

    UniProtKB/TrEMBL
    A0A8C0RJG9
    Conserved Domains (4) summary
    pfam06650
    Location:2627 → 2819
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3740 → 3833
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3581 → 3727
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  10. XM_038555166.1 → XP_038411094.1  vacuolar protein sorting-associated protein 13B isoform X2

    UniProtKB/TrEMBL
    A0A8C0RJG9
    Conserved Domains (4) summary
    pfam06650
    Location:2627 → 2819
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3740 → 3833
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3581 → 3727
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  11. XM_038555169.1 → XP_038411097.1  vacuolar protein sorting-associated protein 13B isoform X5

    UniProtKB/TrEMBL
    A0A8C0NCH4, A0A8C0YYC8
    Conserved Domains (4) summary
    pfam06650
    Location:2580 → 2772
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3693 → 3786
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 49
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3534 → 3680
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  12. XM_038555168.1 → XP_038411096.1  vacuolar protein sorting-associated protein 13B isoform X4

    UniProtKB/TrEMBL
    A0A8C0N699, A0A8C0SJH2, A0A8P0TEZ0
    Conserved Domains (4) summary
    pfam06650
    Location:2603 → 2795
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3716 → 3809
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3557 → 3703
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  13. XM_038555163.1 → XP_038411091.1  vacuolar protein sorting-associated protein 13B isoform X1

    UniProtKB/TrEMBL
    A0A8C0RJG9, A0A8C0SL38, A0A8P0N3S8
    Conserved Domains (4) summary
    pfam06650
    Location:2628 → 2820
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3741 → 3834
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3582 → 3728
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

RNA

  1. XR_005368417.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006595.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    1096682..1830492
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022426560.2 → XP_022282268.1  vacuolar protein sorting-associated protein 13B isoform X7

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  2. XM_038432176.1 → XP_038288104.1  vacuolar protein sorting-associated protein 13B isoform X6

    UniProtKB/TrEMBL
    A0A8C0N9T5
    Conserved Domains (2) summary
    pfam06650
    Location:2628 → 2820
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  3. XM_038432192.1 → XP_038288120.1  vacuolar protein sorting-associated protein 13B isoform X8

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  4. XM_038432194.1 → XP_038288122.1  vacuolar protein sorting-associated protein 13B isoform X9

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  5. XM_005627823.4 → XP_005627880.1  vacuolar protein sorting-associated protein 13B isoform X10

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  6. XM_022426562.2 → XP_022282270.1  vacuolar protein sorting-associated protein 13B isoform X11

    Conserved Domains (1) summary
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13

  7. XM_038432159.1 → XP_038288087.1  vacuolar protein sorting-associated protein 13B isoform X1

    UniProtKB/TrEMBL
    A0A8C0RJG9, A0A8C0SL38, A0A8P0N3S8
    Conserved Domains (4) summary
    pfam06650
    Location:2628 → 2820
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3741 → 3834
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3582 → 3728
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  8. XM_539102.8 → XP_539102.3  vacuolar protein sorting-associated protein 13B isoform X1

    UniProtKB/TrEMBL
    A0A8C0RJG9, A0A8C0SL38, A0A8P0N3S8
    Conserved Domains (4) summary
    pfam06650
    Location:2628 → 2820
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3741 → 3834
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3582 → 3728
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  9. XM_005627820.4 → XP_005627877.2  vacuolar protein sorting-associated protein 13B isoform X3

    UniProtKB/TrEMBL
    A0A8C0RJG9
    Conserved Domains (4) summary
    pfam06650
    Location:2627 → 2819
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3740 → 3833
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3581 → 3727
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  10. XM_005627819.4 → XP_005627876.2  vacuolar protein sorting-associated protein 13B isoform X2

    UniProtKB/TrEMBL
    A0A8C0RJG9
    Conserved Domains (4) summary
    pfam06650
    Location:2627 → 2819
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3740 → 3833
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3581 → 3727
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  11. XM_022426558.2 → XP_022282266.2  vacuolar protein sorting-associated protein 13B isoform X5

    UniProtKB/TrEMBL
    A0A8C0NCH4, A0A8C0YYC8
    Conserved Domains (4) summary
    pfam06650
    Location:2580 → 2772
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3693 → 3786
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 49
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3534 → 3680
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  12. XM_850840.7 → XP_855933.2  vacuolar protein sorting-associated protein 13B isoform X4

    UniProtKB/TrEMBL
    A0A8C0N699, A0A8C0SJH2, A0A8P0TEZ0
    Conserved Domains (4) summary
    pfam06650
    Location:2603 → 2795
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3716 → 3809
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3557 → 3703
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  13. XM_014118535.3 → XP_013974010.2  vacuolar protein sorting-associated protein 13B isoform X1

    UniProtKB/TrEMBL
    A0A8C0RJG9, A0A8C0SL38, A0A8P0N3S8
    Conserved Domains (4) summary
    pfam06650
    Location:2628 → 2820
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3741 → 3834
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:6 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3582 → 3728
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

RNA

  1. XR_002632293.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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