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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference ROS_Cfam_1.0
Genomic
-
NC_051816.1 Reference ROS_Cfam_1.0
- Range
-
2957578..2986887 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_038683166.1 → XP_038539094.1 collagen alpha-2(XI) chain isoform X2
- UniProtKB/TrEMBL
- A0A8C0T7S4, A0A8I3PB22
- Conserved Domains (4) summary
-
- smart00038
Location:1537 → 1732
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:31 → 213
- TSPN; Thrombospondin N-terminal -like domains
- pfam09606
Location:362 → 710
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam01391
Location:652 → 707
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_038683171.1 → XP_038539099.1 collagen alpha-2(XI) chain isoform X7
- UniProtKB/TrEMBL
- A0A8C0NBQ2, A0A8I3PCJ9
- Related
- ENSCAFP00845027873.1, ENSCAFT00845035629.1
- Conserved Domains (4) summary
-
- smart00038
Location:1430 → 1625
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:31 → 213
- TSPN; Thrombospondin N-terminal -like domains
- pfam09606
Location:273 → 603
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam01391
Location:545 → 600
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_038683170.1 → XP_038539098.1 collagen alpha-2(XI) chain isoform X6
- UniProtKB/TrEMBL
- A0A8C0NEJ9, A0A8I3P169
- Related
- ENSCAFP00845027604.1, ENSCAFT00845035262.1
- Conserved Domains (4) summary
-
- smart00038
Location:1451 → 1646
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:31 → 213
- TSPN; Thrombospondin N-terminal -like domains
- pfam09606
Location:255 → 624
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam01391
Location:566 → 621
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_038683165.1 → XP_038539093.1 collagen alpha-2(XI) chain isoform X2
- UniProtKB/TrEMBL
- A0A8C0T7S4, A0A8I3PB22
- Related
- ENSCAFP00845027184.1, ENSCAFT00845034709.1
- Conserved Domains (4) summary
-
- smart00038
Location:1537 → 1732
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:31 → 213
- TSPN; Thrombospondin N-terminal -like domains
- pfam09606
Location:362 → 710
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam01391
Location:652 → 707
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_038683169.1 → XP_038539097.1 collagen alpha-2(XI) chain isoform X5
- UniProtKB/TrEMBL
-
A0A8C0NBQ2
- Conserved Domains (4) summary
-
- smart00038
Location:1475 → 1670
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:76 → 258
- TSPN; Thrombospondin N-terminal -like domains
- pfam09606
Location:318 → 648
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam01391
Location:590 → 645
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_038683168.1 → XP_038539096.1 collagen alpha-2(XI) chain isoform X4
- UniProtKB/TrEMBL
-
A0A8C0NEJ9
- Conserved Domains (4) summary
-
- smart00038
Location:1501 → 1696
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:76 → 258
- TSPN; Thrombospondin N-terminal -like domains
- pfam09606
Location:344 → 674
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam01391
Location:616 → 671
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_038683167.1 → XP_038539095.1 collagen alpha-2(XI) chain isoform X3
- UniProtKB/TrEMBL
-
A0A8C0NEJ9
- Conserved Domains (4) summary
-
- smart00038
Location:1522 → 1717
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:76 → 258
- TSPN; Thrombospondin N-terminal -like domains
- pfam09606
Location:325 → 695
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam01391
Location:637 → 692
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_038683164.1 → XP_038539092.1 collagen alpha-2(XI) chain isoform X1
- UniProtKB/TrEMBL
-
A0A8C0T7S4
- Conserved Domains (4) summary
-
- smart00038
Location:1582 → 1777
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:76 → 258
- TSPN; Thrombospondin N-terminal -like domains
- pfam09606
Location:407 → 755
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam01391
Location:697 → 752
- Collagen; Collagen triple helix repeat (20 copies)
RNA
-
XR_005435328.1 RNA Sequence
Alternate UMICH_Zoey_3.1
Genomic
-
NC_049272.1 Alternate UMICH_Zoey_3.1
- Range
-
2625789..2654790 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_038491477.1 → XP_038347405.1 LOW QUALITY PROTEIN: collagen alpha-2(XI) chain isoform X2
Alternate UNSW_CanFamBas_1.0
Genomic
-
NC_049753.1 Alternate UNSW_CanFamBas_1.0
- Range
-
2707183..2736164 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_038617565.1 → XP_038473493.1 LOW QUALITY PROTEIN: collagen alpha-2(XI) chain isoform X2
Alternate UU_Cfam_GSD_1.0
Genomic
-
NC_049233.1 Alternate UU_Cfam_GSD_1.0
- Range
-
2781723..2811021 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_038553694.1 → XP_038409622.1 collagen alpha-2(XI) chain isoform X2
- UniProtKB/TrEMBL
- A0A8C0T7S4, A0A8P0S6W9
- Conserved Domains (4) summary
-
- smart00038
Location:1537 → 1732
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:31 → 213
- TSPN; Thrombospondin N-terminal -like domains
- PHA03307
Location:370 → 714
- PHA03307; transcriptional regulator ICP4; Provisional
- pfam01391
Location:652 → 707
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_038553700.1 → XP_038409628.1 collagen alpha-2(XI) chain isoform X7
- UniProtKB/TrEMBL
- A0A8C0NBQ2, A0A8P0SNW5
- Conserved Domains (4) summary
-
- smart00038
Location:1430 → 1625
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:31 → 213
- TSPN; Thrombospondin N-terminal -like domains
- PHA03307
Location:263 → 607
- PHA03307; transcriptional regulator ICP4; Provisional
- pfam01391
Location:545 → 600
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_038553699.1 → XP_038409627.1 collagen alpha-2(XI) chain isoform X6
- UniProtKB/TrEMBL
- A0A8C0NEJ9, A0A8P0S765
- Conserved Domains (3) summary
-
- smart00038
Location:1451 → 1646
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:31 → 213
- TSPN; Thrombospondin N-terminal -like domains
- pfam01391
Location:566 → 621
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_038553693.1 → XP_038409621.1 collagen alpha-2(XI) chain isoform X2
- UniProtKB/TrEMBL
- A0A8C0T7S4, A0A8P0S6W9
- Conserved Domains (4) summary
-
- smart00038
Location:1537 → 1732
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:31 → 213
- TSPN; Thrombospondin N-terminal -like domains
- PHA03307
Location:370 → 714
- PHA03307; transcriptional regulator ICP4; Provisional
- pfam01391
Location:652 → 707
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_038553698.1 → XP_038409626.1 collagen alpha-2(XI) chain isoform X5
- UniProtKB/TrEMBL
-
A0A8C0NBQ2
- Conserved Domains (4) summary
-
- smart00038
Location:1475 → 1670
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:76 → 258
- TSPN; Thrombospondin N-terminal -like domains
- PHA03307
Location:308 → 652
- PHA03307; transcriptional regulator ICP4; Provisional
- pfam01391
Location:590 → 645
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_038553697.1 → XP_038409625.1 collagen alpha-2(XI) chain isoform X4
- UniProtKB/TrEMBL
-
A0A8C0NEJ9
- Conserved Domains (4) summary
-
- smart00038
Location:1501 → 1696
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:76 → 258
- TSPN; Thrombospondin N-terminal -like domains
- PHA03307
Location:334 → 678
- PHA03307; transcriptional regulator ICP4; Provisional
- pfam01391
Location:616 → 671
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_038553695.1 → XP_038409623.1 collagen alpha-2(XI) chain isoform X3
- UniProtKB/TrEMBL
-
A0A8C0NEJ9
- Conserved Domains (4) summary
-
- smart00038
Location:1522 → 1717
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:76 → 258
- TSPN; Thrombospondin N-terminal -like domains
- PHA03307
Location:339 → 699
- PHA03307; transcriptional regulator ICP4; Provisional
- pfam01391
Location:637 → 692
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_038553692.1 → XP_038409620.1 collagen alpha-2(XI) chain isoform X1
- UniProtKB/TrEMBL
-
A0A8C0T7S4
- Conserved Domains (4) summary
-
- smart00038
Location:1582 → 1777
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:76 → 258
- TSPN; Thrombospondin N-terminal -like domains
- PHA03307
Location:415 → 759
- PHA03307; transcriptional regulator ICP4; Provisional
- pfam01391
Location:697 → 752
- Collagen; Collagen triple helix repeat (20 copies)
RNA
-
XR_005367548.1 RNA Sequence
Alternate Dog10K_Boxer_Tasha Primary Assembly
Genomic
-
NC_006594.4 Alternate Dog10K_Boxer_Tasha Primary Assembly
- Range
-
2707991..2737297 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005627195.4 → XP_005627252.1 collagen alpha-2(XI) chain isoform X2
See identical proteins and their annotated locations for XP_005627252.1
- UniProtKB/TrEMBL
- A0A8C0T7S4, A0A8P0S6W9
- Conserved Domains (4) summary
-
- smart00038
Location:1537 → 1732
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:31 → 213
- TSPN; Thrombospondin N-terminal -like domains
- PHA03307
Location:370 → 714
- PHA03307; transcriptional regulator ICP4; Provisional
- pfam01391
Location:652 → 707
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_022425927.2 → XP_022281635.1 collagen alpha-2(XI) chain isoform X7
- UniProtKB/TrEMBL
- A0A8C0NBQ2, A0A8P0SNW5
- Conserved Domains (4) summary
-
- smart00038
Location:1430 → 1625
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:31 → 213
- TSPN; Thrombospondin N-terminal -like domains
- PHA03307
Location:263 → 607
- PHA03307; transcriptional regulator ICP4; Provisional
- pfam01391
Location:545 → 600
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_022425926.2 → XP_022281634.1 collagen alpha-2(XI) chain isoform X6
- UniProtKB/TrEMBL
- A0A8C0NEJ9, A0A8P0S765
- Conserved Domains (3) summary
-
- smart00038
Location:1451 → 1646
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:31 → 213
- TSPN; Thrombospondin N-terminal -like domains
- pfam01391
Location:566 → 621
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_538855.6 → XP_538855.2 collagen alpha-2(XI) chain isoform X2
See identical proteins and their annotated locations for XP_538855.2
- UniProtKB/TrEMBL
- A0A8C0T7S4, A0A8P0S6W9
- Conserved Domains (4) summary
-
- smart00038
Location:1537 → 1732
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:31 → 213
- TSPN; Thrombospondin N-terminal -like domains
- PHA03307
Location:370 → 714
- PHA03307; transcriptional regulator ICP4; Provisional
- pfam01391
Location:652 → 707
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_005627196.2 → XP_005627253.1 collagen alpha-2(XI) chain isoform X5
- UniProtKB/TrEMBL
-
A0A8C0NBQ2
- Conserved Domains (4) summary
-
- smart00038
Location:1475 → 1670
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:76 → 258
- TSPN; Thrombospondin N-terminal -like domains
- PHA03307
Location:308 → 652
- PHA03307; transcriptional regulator ICP4; Provisional
- pfam01391
Location:590 → 645
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_014118359.1 → XP_013973834.1 collagen alpha-2(XI) chain isoform X4
- UniProtKB/TrEMBL
-
A0A8C0NEJ9
- Conserved Domains (4) summary
-
- smart00038
Location:1501 → 1696
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:76 → 258
- TSPN; Thrombospondin N-terminal -like domains
- PHA03307
Location:334 → 678
- PHA03307; transcriptional regulator ICP4; Provisional
- pfam01391
Location:616 → 671
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_014118358.1 → XP_013973833.1 collagen alpha-2(XI) chain isoform X3
- UniProtKB/TrEMBL
-
A0A8C0NEJ9
- Conserved Domains (4) summary
-
- smart00038
Location:1522 → 1717
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:76 → 258
- TSPN; Thrombospondin N-terminal -like domains
- PHA03307
Location:339 → 699
- PHA03307; transcriptional regulator ICP4; Provisional
- pfam01391
Location:637 → 692
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_014118356.1 → XP_013973831.1 collagen alpha-2(XI) chain isoform X1
- UniProtKB/TrEMBL
-
A0A8C0T7S4
- Conserved Domains (4) summary
-
- smart00038
Location:1582 → 1777
- COLFI; Fibrillar collagens C-terminal domain
- smart00210
Location:76 → 258
- TSPN; Thrombospondin N-terminal -like domains
- PHA03307
Location:415 → 759
- PHA03307; transcriptional regulator ICP4; Provisional
- pfam01391
Location:697 → 752
- Collagen; Collagen triple helix repeat (20 copies)
-
XM_038684823.1 → XP_038540751.1 collagen alpha-2(XI) chain isoform X8
- Conserved Domains (3) summary
-
- smart00038
Location:1204 → 1399
- COLFI; Fibrillar collagens C-terminal domain
- PHA03307
Location:37 → 381
- PHA03307; transcriptional regulator ICP4; Provisional
- pfam01391
Location:319 → 374
- Collagen; Collagen triple helix repeat (20 copies)
RNA
-
XR_002631768.1 RNA Sequence