U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

COL11A2 collagen type XI alpha 2 chain [ Canis lupus familiaris (dog) ]

Gene ID: 481734, updated on 17-Aug-2024

Summary

Official Symbol
COL11A2provided by VGNC
Official Full Name
collagen type XI alpha 2 chainprovided by VGNC
Primary source
VGNC:VGNC:39457
See related
Ensembl:ENSCAFG00845019587
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See COL11A2 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
68
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 12 NC_051816.1 (2957578..2986887, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 12 NC_006594.4 (2707991..2737297, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 12 NC_049233.1 (2781723..2811021, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 12 NC_049272.1 (2625789..2654790, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 12 NC_049753.1 (2707183..2736164, complement)

Chromosome 12 - NC_051816.1Genomic Context describing neighboring genes Neighboring gene HLA class II histocompatibility antigen, DP beta 1 chain-like Neighboring gene uncharacterized LOC102152980 Neighboring gene small Cajal body-specific RNA 20 Neighboring gene 60S ribosomal protein L11-like Neighboring gene retinoid X receptor beta Neighboring gene solute carrier family 39 member 7 Neighboring gene hydroxysteroid 17-beta dehydrogenase 8

Genomic regions, transcripts, and products

General protein information

Preferred Names
collagen alpha-2(XI) chain; LOW QUALITY PROTEIN: collagen alpha-2(XI) chain

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051816.1 Reference ROS_Cfam_1.0

    Range
    2957578..2986887 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038683166.1XP_038539094.1  collagen alpha-2(XI) chain isoform X2

    UniProtKB/TrEMBL
    A0A8C0T7S4, A0A8I3PB22
    Conserved Domains (4) summary
    smart00038
    Location:15371732
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains
    pfam09606
    Location:362710
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam01391
    Location:652707
    Collagen; Collagen triple helix repeat (20 copies)
  2. XM_038683171.1XP_038539099.1  collagen alpha-2(XI) chain isoform X7

    UniProtKB/TrEMBL
    A0A8C0NBQ2, A0A8I3PCJ9
    Related
    ENSCAFP00845027873.1, ENSCAFT00845035629.1
    Conserved Domains (4) summary
    smart00038
    Location:14301625
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains
    pfam09606
    Location:273603
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam01391
    Location:545600
    Collagen; Collagen triple helix repeat (20 copies)
  3. XM_038683170.1XP_038539098.1  collagen alpha-2(XI) chain isoform X6

    UniProtKB/TrEMBL
    A0A8C0NEJ9, A0A8I3P169
    Related
    ENSCAFP00845027604.1, ENSCAFT00845035262.1
    Conserved Domains (4) summary
    smart00038
    Location:14511646
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains
    pfam09606
    Location:255624
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam01391
    Location:566621
    Collagen; Collagen triple helix repeat (20 copies)
  4. XM_038683165.1XP_038539093.1  collagen alpha-2(XI) chain isoform X2

    UniProtKB/TrEMBL
    A0A8C0T7S4, A0A8I3PB22
    Related
    ENSCAFP00845027184.1, ENSCAFT00845034709.1
    Conserved Domains (4) summary
    smart00038
    Location:15371732
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains
    pfam09606
    Location:362710
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam01391
    Location:652707
    Collagen; Collagen triple helix repeat (20 copies)
  5. XM_038683169.1XP_038539097.1  collagen alpha-2(XI) chain isoform X5

    UniProtKB/TrEMBL
    A0A8C0NBQ2
    Conserved Domains (4) summary
    smart00038
    Location:14751670
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:76258
    TSPN; Thrombospondin N-terminal -like domains
    pfam09606
    Location:318648
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam01391
    Location:590645
    Collagen; Collagen triple helix repeat (20 copies)
  6. XM_038683168.1XP_038539096.1  collagen alpha-2(XI) chain isoform X4

    UniProtKB/TrEMBL
    A0A8C0NEJ9
    Conserved Domains (4) summary
    smart00038
    Location:15011696
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:76258
    TSPN; Thrombospondin N-terminal -like domains
    pfam09606
    Location:344674
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam01391
    Location:616671
    Collagen; Collagen triple helix repeat (20 copies)
  7. XM_038683167.1XP_038539095.1  collagen alpha-2(XI) chain isoform X3

    UniProtKB/TrEMBL
    A0A8C0NEJ9
    Conserved Domains (4) summary
    smart00038
    Location:15221717
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:76258
    TSPN; Thrombospondin N-terminal -like domains
    pfam09606
    Location:325695
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam01391
    Location:637692
    Collagen; Collagen triple helix repeat (20 copies)
  8. XM_038683164.1XP_038539092.1  collagen alpha-2(XI) chain isoform X1

    UniProtKB/TrEMBL
    A0A8C0T7S4
    Conserved Domains (4) summary
    smart00038
    Location:15821777
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:76258
    TSPN; Thrombospondin N-terminal -like domains
    pfam09606
    Location:407755
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam01391
    Location:697752
    Collagen; Collagen triple helix repeat (20 copies)

RNA

  1. XR_005435328.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049272.1 Alternate UMICH_Zoey_3.1

    Range
    2625789..2654790 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038491477.1XP_038347405.1  LOW QUALITY PROTEIN: collagen alpha-2(XI) chain isoform X2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049753.1 Alternate UNSW_CanFamBas_1.0

    Range
    2707183..2736164 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038617565.1XP_038473493.1  LOW QUALITY PROTEIN: collagen alpha-2(XI) chain isoform X2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049233.1 Alternate UU_Cfam_GSD_1.0

    Range
    2781723..2811021 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038553694.1XP_038409622.1  collagen alpha-2(XI) chain isoform X2

    UniProtKB/TrEMBL
    A0A8C0T7S4, A0A8P0S6W9
    Conserved Domains (4) summary
    smart00038
    Location:15371732
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains
    PHA03307
    Location:370714
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01391
    Location:652707
    Collagen; Collagen triple helix repeat (20 copies)
  2. XM_038553700.1XP_038409628.1  collagen alpha-2(XI) chain isoform X7

    UniProtKB/TrEMBL
    A0A8C0NBQ2, A0A8P0SNW5
    Conserved Domains (4) summary
    smart00038
    Location:14301625
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains
    PHA03307
    Location:263607
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01391
    Location:545600
    Collagen; Collagen triple helix repeat (20 copies)
  3. XM_038553699.1XP_038409627.1  collagen alpha-2(XI) chain isoform X6

    UniProtKB/TrEMBL
    A0A8C0NEJ9, A0A8P0S765
    Conserved Domains (3) summary
    smart00038
    Location:14511646
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains
    pfam01391
    Location:566621
    Collagen; Collagen triple helix repeat (20 copies)
  4. XM_038553693.1XP_038409621.1  collagen alpha-2(XI) chain isoform X2

    UniProtKB/TrEMBL
    A0A8C0T7S4, A0A8P0S6W9
    Conserved Domains (4) summary
    smart00038
    Location:15371732
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains
    PHA03307
    Location:370714
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01391
    Location:652707
    Collagen; Collagen triple helix repeat (20 copies)
  5. XM_038553698.1XP_038409626.1  collagen alpha-2(XI) chain isoform X5

    UniProtKB/TrEMBL
    A0A8C0NBQ2
    Conserved Domains (4) summary
    smart00038
    Location:14751670
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:76258
    TSPN; Thrombospondin N-terminal -like domains
    PHA03307
    Location:308652
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01391
    Location:590645
    Collagen; Collagen triple helix repeat (20 copies)
  6. XM_038553697.1XP_038409625.1  collagen alpha-2(XI) chain isoform X4

    UniProtKB/TrEMBL
    A0A8C0NEJ9
    Conserved Domains (4) summary
    smart00038
    Location:15011696
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:76258
    TSPN; Thrombospondin N-terminal -like domains
    PHA03307
    Location:334678
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01391
    Location:616671
    Collagen; Collagen triple helix repeat (20 copies)
  7. XM_038553695.1XP_038409623.1  collagen alpha-2(XI) chain isoform X3

    UniProtKB/TrEMBL
    A0A8C0NEJ9
    Conserved Domains (4) summary
    smart00038
    Location:15221717
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:76258
    TSPN; Thrombospondin N-terminal -like domains
    PHA03307
    Location:339699
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01391
    Location:637692
    Collagen; Collagen triple helix repeat (20 copies)
  8. XM_038553692.1XP_038409620.1  collagen alpha-2(XI) chain isoform X1

    UniProtKB/TrEMBL
    A0A8C0T7S4
    Conserved Domains (4) summary
    smart00038
    Location:15821777
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:76258
    TSPN; Thrombospondin N-terminal -like domains
    PHA03307
    Location:415759
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01391
    Location:697752
    Collagen; Collagen triple helix repeat (20 copies)

RNA

  1. XR_005367548.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006594.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    2707991..2737297 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005627195.4XP_005627252.1  collagen alpha-2(XI) chain isoform X2

    See identical proteins and their annotated locations for XP_005627252.1

    UniProtKB/TrEMBL
    A0A8C0T7S4, A0A8P0S6W9
    Conserved Domains (4) summary
    smart00038
    Location:15371732
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains
    PHA03307
    Location:370714
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01391
    Location:652707
    Collagen; Collagen triple helix repeat (20 copies)
  2. XM_022425927.2XP_022281635.1  collagen alpha-2(XI) chain isoform X7

    UniProtKB/TrEMBL
    A0A8C0NBQ2, A0A8P0SNW5
    Conserved Domains (4) summary
    smart00038
    Location:14301625
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains
    PHA03307
    Location:263607
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01391
    Location:545600
    Collagen; Collagen triple helix repeat (20 copies)
  3. XM_022425926.2XP_022281634.1  collagen alpha-2(XI) chain isoform X6

    UniProtKB/TrEMBL
    A0A8C0NEJ9, A0A8P0S765
    Conserved Domains (3) summary
    smart00038
    Location:14511646
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains
    pfam01391
    Location:566621
    Collagen; Collagen triple helix repeat (20 copies)
  4. XM_538855.6XP_538855.2  collagen alpha-2(XI) chain isoform X2

    See identical proteins and their annotated locations for XP_538855.2

    UniProtKB/TrEMBL
    A0A8C0T7S4, A0A8P0S6W9
    Conserved Domains (4) summary
    smart00038
    Location:15371732
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains
    PHA03307
    Location:370714
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01391
    Location:652707
    Collagen; Collagen triple helix repeat (20 copies)
  5. XM_005627196.2XP_005627253.1  collagen alpha-2(XI) chain isoform X5

    UniProtKB/TrEMBL
    A0A8C0NBQ2
    Conserved Domains (4) summary
    smart00038
    Location:14751670
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:76258
    TSPN; Thrombospondin N-terminal -like domains
    PHA03307
    Location:308652
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01391
    Location:590645
    Collagen; Collagen triple helix repeat (20 copies)
  6. XM_014118359.1XP_013973834.1  collagen alpha-2(XI) chain isoform X4

    UniProtKB/TrEMBL
    A0A8C0NEJ9
    Conserved Domains (4) summary
    smart00038
    Location:15011696
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:76258
    TSPN; Thrombospondin N-terminal -like domains
    PHA03307
    Location:334678
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01391
    Location:616671
    Collagen; Collagen triple helix repeat (20 copies)
  7. XM_014118358.1XP_013973833.1  collagen alpha-2(XI) chain isoform X3

    UniProtKB/TrEMBL
    A0A8C0NEJ9
    Conserved Domains (4) summary
    smart00038
    Location:15221717
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:76258
    TSPN; Thrombospondin N-terminal -like domains
    PHA03307
    Location:339699
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01391
    Location:637692
    Collagen; Collagen triple helix repeat (20 copies)
  8. XM_014118356.1XP_013973831.1  collagen alpha-2(XI) chain isoform X1

    UniProtKB/TrEMBL
    A0A8C0T7S4
    Conserved Domains (4) summary
    smart00038
    Location:15821777
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:76258
    TSPN; Thrombospondin N-terminal -like domains
    PHA03307
    Location:415759
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01391
    Location:697752
    Collagen; Collagen triple helix repeat (20 copies)
  9. XM_038684823.1XP_038540751.1  collagen alpha-2(XI) chain isoform X8

    Conserved Domains (3) summary
    smart00038
    Location:12041399
    COLFI; Fibrillar collagens C-terminal domain
    PHA03307
    Location:37381
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam01391
    Location:319374
    Collagen; Collagen triple helix repeat (20 copies)

RNA

  1. XR_002631768.1 RNA Sequence