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AKNA AT-hook transcription factor [ Canis lupus familiaris (dog) ]

Gene ID: 481687, updated on 17-Aug-2024

Summary

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Official Symbol
AKNAprovided by VGNC
Official Full Name
AT-hook transcription factorprovided by VGNC
Primary source
VGNC:VGNC:37767
See related
Ensembl:ENSCAFG00845009820
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See AKNA in Genome Data Viewer
Location:
chromosome: 11
Exon count:
25
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (69685075..69735745, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (66963594..67015403, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (68970892..69009519, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (68200458..68251202, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (68241770..68292620, complement)

Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene collagen type XXVII alpha 1 chain Neighboring gene uncharacterized LOC111097888 Neighboring gene alpha-1-acid glycoprotein 1 Neighboring gene whirlin Neighboring gene uncharacterized LOC111097889 Neighboring gene uncharacterized LOC119873982

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in epithelial to mesenchymal transition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuroblast delamination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuroblast division in subventricular zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AT-hook-containing transcription factor; LOW QUALITY PROTEIN: microtubule organization protein AKNA; microtubule organization protein AKNA

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051815.1 Reference ROS_Cfam_1.0

    Range
    69685075..69735745 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038682538.1 → XP_038538466.1  microtubule organization protein AKNA

    UniProtKB/TrEMBL
    A0A8C0QI07, A0A8I3N877
    Conserved Domains (3) summary
    PTZ00449
    Location:874 → 1174
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    PHA03307
    Location:1088 → 1314
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam12443
    Location:585 → 683
    AKNA; AT-hook-containing transcription factor

  2. XM_038682540.1 → XP_038538468.1  microtubule organization protein AKNA

    UniProtKB/TrEMBL
    A0A8C0QI07, A0A8I3N877
    Conserved Domains (3) summary
    PTZ00449
    Location:874 → 1174
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    PHA03307
    Location:1088 → 1314
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam12443
    Location:585 → 683
    AKNA; AT-hook-containing transcription factor

  3. XM_038682537.1 → XP_038538465.1  microtubule organization protein AKNA

    UniProtKB/TrEMBL
    A0A8C0QI07, A0A8I3N877
    Related
    ENSCAFP00845013509.1, ENSCAFT00845017342.1
    Conserved Domains (3) summary
    PTZ00449
    Location:874 → 1174
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    PHA03307
    Location:1088 → 1314
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam12443
    Location:585 → 683
    AKNA; AT-hook-containing transcription factor

  4. XM_038682539.1 → XP_038538467.1  microtubule organization protein AKNA

    UniProtKB/TrEMBL
    A0A8C0QI07, A0A8I3N877
    Conserved Domains (3) summary
    PTZ00449
    Location:874 → 1174
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    PHA03307
    Location:1088 → 1314
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam12443
    Location:585 → 683
    AKNA; AT-hook-containing transcription factor

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049271.1 Alternate UMICH_Zoey_3.1

    Range
    68200458..68251202 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038491071.1 → XP_038346999.1  microtubule organization protein AKNA

  2. XM_038491073.1 → XP_038347001.1  microtubule organization protein AKNA

  3. XM_038491070.1 → XP_038346998.1  microtubule organization protein AKNA

  4. XM_038491072.1 → XP_038347000.1  microtubule organization protein AKNA

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

    Range
    68241770..68292620 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038617085.1 → XP_038473013.1  LOW QUALITY PROTEIN: microtubule organization protein AKNA

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

    Range
    68970892..69009519 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038553208.1 → XP_038409136.1  LOW QUALITY PROTEIN: microtubule organization protein AKNA

    UniProtKB/TrEMBL
    A0A8C0QI07

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    66963594..67015403 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038656839.1 → XP_038512767.1  microtubule organization protein AKNA

    UniProtKB/TrEMBL
    A0A8C0QI07, A0A8P0NQG2
    Conserved Domains (3) summary
    PTZ00449
    Location:874 → 1174
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    PHA03307
    Location:1088 → 1314
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam12443
    Location:585 → 683
    AKNA; AT-hook-containing transcription factor

  2. XM_038656858.1 → XP_038512786.1  microtubule organization protein AKNA

    UniProtKB/TrEMBL
    A0A8C0QI07, A0A8P0NQG2
    Conserved Domains (3) summary
    PTZ00449
    Location:874 → 1174
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    PHA03307
    Location:1088 → 1314
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam12443
    Location:585 → 683
    AKNA; AT-hook-containing transcription factor

  3. XM_038656829.1 → XP_038512757.1  microtubule organization protein AKNA

    UniProtKB/TrEMBL
    A0A8C0QI07, A0A8P0NQG2
    Conserved Domains (3) summary
    PTZ00449
    Location:874 → 1174
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    PHA03307
    Location:1088 → 1314
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam12443
    Location:585 → 683
    AKNA; AT-hook-containing transcription factor

  4. XM_014117950.3 → XP_013973425.2  microtubule organization protein AKNA

    UniProtKB/TrEMBL
    A0A8C0QI07, A0A8P0NQG2
    Conserved Domains (3) summary
    PTZ00449
    Location:874 → 1174
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    PHA03307
    Location:1088 → 1314
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam12443
    Location:585 → 683
    AKNA; AT-hook-containing transcription factor
Nucleotide Protein
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