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SBF2 SET binding factor 2 [ Canis lupus familiaris (dog) ]

Gene ID: 476849, updated on 17-Aug-2024

Summary

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Official Symbol
SBF2provided by VGNC
Official Full Name
SET binding factor 2provided by VGNC
Primary source
VGNC:VGNC:45882
See related
Ensembl:ENSCAFG00845014152
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 21
Exon count:
41
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 21 NC_051825.1 (33884844..34339237, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 21 NC_006603.4 (32572917..33027475, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 21 NC_049242.1 (33608361..34063333, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 21 NC_049281.1 (33146942..33601015, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 21 NC_049762.1 (33314307..33770459, complement)

Chromosome 21 - NC_051825.1Genomic Context describing neighboring genes Neighboring gene switching B cell complex subunit SWAP70 Neighboring gene collagen alpha-1(I) chain-like Neighboring gene uncharacterized LOC111091555 Neighboring gene enkurin domain-containing protein 1-like Neighboring gene 26S proteasome non-ATPase regulatory subunit 9-like Neighboring gene uncharacterized LOC119865007 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene keratin, type II cytoskeletal 8-like Neighboring gene cell division cycle protein 16 homolog Neighboring gene protein S100-A6-like Neighboring gene 60S ribosomal protein L17-like Neighboring gene translationally-controlled tumor protein-like Neighboring gene adrenomedullin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
myotubularin-related protein 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051825.1 Reference ROS_Cfam_1.0

    Range
    33884844..34339237 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038430488.1 → XP_038286416.1  myotubularin-related protein 13 isoform X1

    UniProtKB/TrEMBL
    A0A8C0MBC0, A0A8C0MFP1, A0A8I3NTI5
    Related
    ENSCAFP00845019958.1, ENSCAFT00845025360.1
    Conserved Domains (7) summary
    smart00801
    Location:352 → 420
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:1 → 86
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    cd01235
    Location:1774 → 1879
    PH_Sbf1_hMTMR5; Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain
    pfam02141
    Location:116 → 298
    DENN; DENN (AEX-3) domain
    pfam12335
    Location:531 → 754
    SBF2; Myotubularin protein
    cl17171
    Location:882 → 1000
    PH-like; Pleckstrin homology-like domain
    cl28904
    Location:1138 → 1517
    PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

  2. XM_038430489.1 → XP_038286417.1  myotubularin-related protein 13 isoform X2

    UniProtKB/TrEMBL
    A0A8C0MLQ1, A0A8C0RDL8, A0A8I3S0Q6
    Related
    ENSCAFP00845020084.1, ENSCAFT00845025509.1
    Conserved Domains (7) summary
    smart00801
    Location:352 → 420
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:1 → 86
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    cd01235
    Location:1742 → 1847
    PH_Sbf1_hMTMR5; Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain
    cd14589
    Location:1138 → 1485
    PTP-MTMR13; protein tyrosine phosphatase-like pseudophosphatase domain of myotubularin related phosphoinositide phosphatase 13
    pfam02141
    Location:116 → 298
    DENN; DENN (AEX-3) domain
    pfam12335
    Location:531 → 754
    SBF2; Myotubularin protein
    cl17171
    Location:882 → 1000
    PH-like; Pleckstrin homology-like domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049281.1 Alternate UMICH_Zoey_3.1

    Range
    33146942..33601015 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038505793.1 → XP_038361721.1  myotubularin-related protein 13 isoform X1

    Conserved Domains (7) summary
    smart00801
    Location:352 → 420
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:1 → 86
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    cd01235
    Location:1774 → 1879
    PH_Sbf1_hMTMR5; Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain
    pfam02141
    Location:116 → 298
    DENN; DENN (AEX-3) domain
    pfam12335
    Location:531 → 754
    SBF2; Myotubularin protein
    cl17171
    Location:882 → 1000
    PH-like; Pleckstrin homology-like domain
    cl28904
    Location:1138 → 1517
    PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

  2. XM_038505794.1 → XP_038361722.1  myotubularin-related protein 13 isoform X2

    Conserved Domains (7) summary
    smart00801
    Location:352 → 420
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:1 → 86
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    cd01235
    Location:1742 → 1847
    PH_Sbf1_hMTMR5; Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain
    cd14589
    Location:1138 → 1485
    PTP-MTMR13; protein tyrosine phosphatase-like pseudophosphatase domain of myotubularin related phosphoinositide phosphatase 13
    pfam02141
    Location:116 → 298
    DENN; DENN (AEX-3) domain
    pfam12335
    Location:531 → 754
    SBF2; Myotubularin protein
    cl17171
    Location:882 → 1000
    PH-like; Pleckstrin homology-like domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049762.1 Alternate UNSW_CanFamBas_1.0

    Range
    33314307..33770459 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038633204.1 → XP_038489132.1  myotubularin-related protein 13 isoform X1

    Conserved Domains (7) summary
    smart00801
    Location:352 → 420
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:1 → 86
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    cd01235
    Location:1774 → 1879
    PH_Sbf1_hMTMR5; Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain
    pfam02141
    Location:116 → 298
    DENN; DENN (AEX-3) domain
    pfam12335
    Location:531 → 754
    SBF2; Myotubularin protein
    cl17171
    Location:882 → 1000
    PH-like; Pleckstrin homology-like domain
    cl28904
    Location:1138 → 1517
    PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

  2. XM_038633205.1 → XP_038489133.1  myotubularin-related protein 13 isoform X2

    Conserved Domains (7) summary
    smart00801
    Location:352 → 420
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:1 → 86
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    cd01235
    Location:1742 → 1847
    PH_Sbf1_hMTMR5; Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain
    cd14589
    Location:1138 → 1485
    PTP-MTMR13; protein tyrosine phosphatase-like pseudophosphatase domain of myotubularin related phosphoinositide phosphatase 13
    pfam02141
    Location:116 → 298
    DENN; DENN (AEX-3) domain
    pfam12335
    Location:531 → 754
    SBF2; Myotubularin protein
    cl17171
    Location:882 → 1000
    PH-like; Pleckstrin homology-like domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049242.1 Alternate UU_Cfam_GSD_1.0

    Range
    33608361..34063333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038569025.1 → XP_038424953.1  myotubularin-related protein 13 isoform X1

    UniProtKB/TrEMBL
    A0A8C0MBC0, A0A8C0MFP1, A0A8I3NTI5
    Conserved Domains (7) summary
    smart00801
    Location:352 → 420
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:1 → 86
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    cd01235
    Location:1774 → 1879
    PH_Sbf1_hMTMR5; Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain
    pfam02141
    Location:116 → 298
    DENN; DENN (AEX-3) domain
    pfam12335
    Location:531 → 754
    SBF2; Myotubularin protein
    cl17171
    Location:882 → 1000
    PH-like; Pleckstrin homology-like domain
    cl28904
    Location:1138 → 1517
    PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

  2. XM_038569026.1 → XP_038424954.1  myotubularin-related protein 13 isoform X2

    UniProtKB/TrEMBL
    A0A8C0MLQ1, A0A8C0RDL8, A0A8I3S0Q6
    Conserved Domains (7) summary
    smart00801
    Location:352 → 420
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:1 → 86
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    cd01235
    Location:1742 → 1847
    PH_Sbf1_hMTMR5; Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain
    cd14589
    Location:1138 → 1485
    PTP-MTMR13; protein tyrosine phosphatase-like pseudophosphatase domain of myotubularin related phosphoinositide phosphatase 13
    pfam02141
    Location:116 → 298
    DENN; DENN (AEX-3) domain
    pfam12335
    Location:531 → 754
    SBF2; Myotubularin protein
    cl17171
    Location:882 → 1000
    PH-like; Pleckstrin homology-like domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006603.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    32572917..33027475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005633663.4 → XP_005633720.1  myotubularin-related protein 13 isoform X1

    UniProtKB/TrEMBL
    A0A8C0MBC0, A0A8C0MFP1, A0A8I3NTI5
    Conserved Domains (7) summary
    smart00801
    Location:352 → 420
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:1 → 86
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    cd01235
    Location:1774 → 1879
    PH_Sbf1_hMTMR5; Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain
    pfam02141
    Location:116 → 298
    DENN; DENN (AEX-3) domain
    pfam12335
    Location:531 → 754
    SBF2; Myotubularin protein
    cl17171
    Location:882 → 1000
    PH-like; Pleckstrin homology-like domain
    cl28904
    Location:1138 → 1517
    PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

  2. XM_534052.7 → XP_534052.3  myotubularin-related protein 13 isoform X2

    UniProtKB/TrEMBL
    A0A8C0MLQ1, A0A8C0RDL8, A0A8I3S0Q6
    Conserved Domains (7) summary
    smart00801
    Location:352 → 420
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:1 → 86
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    cd01235
    Location:1742 → 1847
    PH_Sbf1_hMTMR5; Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain
    cd14589
    Location:1138 → 1485
    PTP-MTMR13; protein tyrosine phosphatase-like pseudophosphatase domain of myotubularin related phosphoinositide phosphatase 13
    pfam02141
    Location:116 → 298
    DENN; DENN (AEX-3) domain
    pfam12335
    Location:531 → 754
    SBF2; Myotubularin protein
    cl17171
    Location:882 → 1000
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
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