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rpoB RNA polymerase beta subunit [ Thalassiosira pseudonana ]

Gene ID: 4524729, updated on 18-Aug-2023

Summary

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Gene symbol
rpoB
Gene description
RNA polymerase beta subunit
Locus tag
ThpsCp034
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Sequence:
NC_008589.1 (34687..38847, complement)

NC_008589.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase beta'' subunit Neighboring gene RNA polymerase beta' subunit Neighboring gene ribosomal protein S20 Neighboring gene ribosomal protein L33

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_008589.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage. Oudot-Le Secq MP, et al. Mol Genet Genomics, 2007 Apr. PMID 17252281

GeneRIFs: Gene References Into Functions

General protein information

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Names
RNA polymerase beta subunit
YP_874523.1
  • one of four subunits of the minimal PEP RNA polymerase catalytic core

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_008589.1 Reference assembly

    Range
    34687..38847 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_874523.1 DNA-directed RNA polymerase beta chain [Thalassiosira pseudonana]

    See identical proteins and their annotated locations for YP_874523.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A0T0R1
    UniProtKB/TrEMBL
    A0A8F0WFV6
    Conserved Domains (6) summary
    CHL00207
    Location:299 → 1373
    rpoB; RNA polymerase beta subunit; Provisional
    cd00653
    Location:521 → 1344
    RNA_pol_B_RPB2; RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase ...
    TIGR04313
    Location:253 → 482
    aro_clust_Mycop; aromatic cluster surface protein
    pfam04561
    Location:427 → 613
    RNA_pol_Rpb2_2; RNA polymerase Rpb2, domain 2
    pfam10385
    Location:745 → 812
    RNA_pol_Rpb2_45; RNA polymerase beta subunit external 1 domain
    cl24011
    Location:10 → 130
    RNA_pol_B_RPB2; RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0T0R1.1

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