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CELF1 CUGBP Elav-like family member 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 451173, updated on 10-Oct-2024

Summary

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Gene symbol
CELF1
Gene description
CUGBP Elav-like family member 1
Locus tag
CK820_G0028886
See related
Ensembl:ENSPTRG00000052299
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See CELF1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 9 NC_072407.2 (51483424..51570149, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 11 NC_072409.1 (51287818..51387281, complement)

Chromosome 9 - NC_072407.2Genomic Context describing neighboring genes Neighboring gene proteasome 26S subunit, ATPase 3 Neighboring gene receptor associated protein of the synapse Neighboring gene U5 spliceosomal RNA Neighboring gene protein tyrosine phosphatase mitochondrial 1 Neighboring gene kelch repeat and BTB domain containing 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CUGBP Elav-like family member 1
Names
CUG triplet repeat RNA-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001280200.1 → NP_001267129.1  CUGBP Elav-like family member 1

    See identical proteins and their annotated locations for NP_001267129.1

    Status: PROVISIONAL

    Source sequence(s)
    AK305501
    UniProtKB/TrEMBL
    G2HFI7
    Related
    ENSPTRP00000082454.1, ENSPTRT00000082112.1
    Conserved Domains (4) summary
    cd12631
    Location:15 → 98
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107 → 187
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:391 → 482
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:18 → 478
    ELAV_HUD_SF; ELAV/HuD family splicing factor

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072407.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    51483424..51570149 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063782483.1 → XP_063638553.1  CUGBP Elav-like family member 1 isoform X6

    UniProtKB/TrEMBL
    A0A2J8LGT0

  2. XM_063782453.1 → XP_063638523.1  CUGBP Elav-like family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3T058, A0A2J8LGT3, A0A6D2W1T1

  3. XM_063782461.1 → XP_063638531.1  CUGBP Elav-like family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8LGU2, A0A8I3B1P4, K7AI21, K7DDA1

  4. XM_063782480.1 → XP_063638550.1  CUGBP Elav-like family member 1 isoform X5

    UniProtKB/TrEMBL
    A0A2I3SDA0

  5. XM_063782460.1 → XP_063638530.1  CUGBP Elav-like family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8LGU2, A0A8I3B1P4, K7AI21, K7DDA1

  6. XM_063782463.1 → XP_063638533.1  CUGBP Elav-like family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8LGU2, A0A8I3B1P4, K7AI21, K7DDA1

  7. XM_063782454.1 → XP_063638524.1  CUGBP Elav-like family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3T058, A0A2J8LGT3, A0A6D2W1T1

  8. XM_063782456.1 → XP_063638526.1  CUGBP Elav-like family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3T058, A0A2J8LGT3, A0A6D2W1T1

  9. XM_054661092.2 → XP_054517067.1  CUGBP Elav-like family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8LGU2, A0A8I3B1P4, K7AI21, K7DDA1

  10. XM_063782492.1 → XP_063638562.1  CUGBP Elav-like family member 1 isoform X8

    UniProtKB/TrEMBL
    A0A2J8LGW0, K7B3N5

  11. XM_063782491.1 → XP_063638561.1  CUGBP Elav-like family member 1 isoform X8

    UniProtKB/TrEMBL
    A0A2J8LGW0, K7B3N5

  12. XM_063782490.1 → XP_063638560.1  CUGBP Elav-like family member 1 isoform X8

    UniProtKB/TrEMBL
    A0A2J8LGW0, K7B3N5

  13. XM_063782489.1 → XP_063638559.1  CUGBP Elav-like family member 1 isoform X8

    UniProtKB/TrEMBL
    A0A2J8LGW0, K7B3N5

  14. XM_063782488.1 → XP_063638558.1  CUGBP Elav-like family member 1 isoform X7

    UniProtKB/TrEMBL
    A0A2J8LGU7

  15. XM_063782487.1 → XP_063638557.1  CUGBP Elav-like family member 1 isoform X7

    UniProtKB/TrEMBL
    A0A2J8LGU7

  16. XM_063782486.1 → XP_063638556.1  CUGBP Elav-like family member 1 isoform X7

    UniProtKB/TrEMBL
    A0A2J8LGU7

  17. XM_063782485.1 → XP_063638555.1  CUGBP Elav-like family member 1 isoform X6

    UniProtKB/TrEMBL
    A0A2J8LGT0

  18. XM_063782484.1 → XP_063638554.1  CUGBP Elav-like family member 1 isoform X6

    UniProtKB/TrEMBL
    A0A2J8LGT0

  19. XM_063782482.1 → XP_063638552.1  CUGBP Elav-like family member 1 isoform X5

    UniProtKB/TrEMBL
    A0A2I3SDA0

  20. XM_063782481.1 → XP_063638551.1  CUGBP Elav-like family member 1 isoform X5

    UniProtKB/TrEMBL
    A0A2I3SDA0

  21. XM_063782462.1 → XP_063638532.1  CUGBP Elav-like family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8LGU2, A0A8I3B1P4, K7AI21, K7DDA1

  22. XM_063782455.1 → XP_063638525.1  CUGBP Elav-like family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3T058, A0A2J8LGT3, A0A6D2W1T1

  23. XM_063782459.1 → XP_063638529.1  CUGBP Elav-like family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3T058, A0A2J8LGT3, A0A6D2W1T1

  24. XM_063782479.1 → XP_063638549.1  CUGBP Elav-like family member 1 isoform X4

    UniProtKB/TrEMBL
    K7C5R9

  25. XM_063782477.1 → XP_063638547.1  CUGBP Elav-like family member 1 isoform X4

    UniProtKB/TrEMBL
    K7C5R9

  26. XM_063782475.1 → XP_063638545.1  CUGBP Elav-like family member 1 isoform X4

    UniProtKB/TrEMBL
    K7C5R9

  27. XM_054661093.2 → XP_054517068.1  CUGBP Elav-like family member 1 isoform X3

  28. XM_063782464.1 → XP_063638534.1  CUGBP Elav-like family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8LGU2, A0A8I3B1P4, K7AI21, K7DDA1

  29. XM_054661096.2 → XP_054517071.1  CUGBP Elav-like family member 1 isoform X4

    UniProtKB/TrEMBL
    K7C5R9

  30. XM_024346816.3 → XP_024202584.1  CUGBP Elav-like family member 1 isoform X4

    UniProtKB/TrEMBL
    A0A2I3SZN4, K7C5R9
    Conserved Domains (3) summary
    cd12638
    Location:417 → 508
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:42 → 125
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:134 → 214
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins

  31. XM_063782470.1 → XP_063638540.1  CUGBP Elav-like family member 1 isoform X3

  32. XM_063782468.1 → XP_063638538.1  CUGBP Elav-like family member 1 isoform X3

  33. XM_063782466.1 → XP_063638536.1  CUGBP Elav-like family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8LGU2, A0A8I3B1P4, K7AI21, K7DDA1

  34. XM_016919784.4 → XP_016775273.1  CUGBP Elav-like family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8LGU2, A0A8I3B1P4, K7AI21, K7DDA1
    Conserved Domains (3) summary
    cd12638
    Location:421 → 512
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:42 → 125
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:134 → 214
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins

  35. XM_054661090.2 → XP_054517065.1  CUGBP Elav-like family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3T058, A0A2J8LGT3, A0A6D2W1T1

  36. XM_063782458.1 → XP_063638528.1  CUGBP Elav-like family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3T058, A0A2J8LGT3, A0A6D2W1T1

  37. XM_063782478.1 → XP_063638548.1  CUGBP Elav-like family member 1 isoform X4

    UniProtKB/TrEMBL
    K7C5R9

  38. XM_063782476.1 → XP_063638546.1  CUGBP Elav-like family member 1 isoform X4

    UniProtKB/TrEMBL
    K7C5R9

  39. XM_063782474.1 → XP_063638544.1  CUGBP Elav-like family member 1 isoform X4

    UniProtKB/TrEMBL
    K7C5R9

  40. XM_063782469.1 → XP_063638539.1  CUGBP Elav-like family member 1 isoform X3

  41. XM_063782467.1 → XP_063638537.1  CUGBP Elav-like family member 1 isoform X3

  42. XM_063782465.1 → XP_063638535.1  CUGBP Elav-like family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8LGU2, A0A8I3B1P4, K7AI21, K7DDA1

  43. XM_063782457.1 → XP_063638527.1  CUGBP Elav-like family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3T058, A0A2J8LGT3, A0A6D2W1T1

  44. XM_063782471.1 → XP_063638541.1  CUGBP Elav-like family member 1 isoform X3

  45. XM_063782473.1 → XP_063638543.1  CUGBP Elav-like family member 1 isoform X3

  46. XM_063782472.1 → XP_063638542.1  CUGBP Elav-like family member 1 isoform X3

  47. XM_063782495.1 → XP_063638565.1  CUGBP Elav-like family member 1 isoform X10

  48. XM_063782494.1 → XP_063638564.1  CUGBP Elav-like family member 1 isoform X9

  49. XM_063782493.1 → XP_063638563.1  CUGBP Elav-like family member 1 isoform X9

Nucleotide Protein
Heading Accession and Version

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