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stmn2 stathmin 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 448716, updated on 4-Nov-2024

Summary

Official Symbol
stmn2provided by Xenbase
Official Full Name
stathmin 2provided by Xenbase
Primary source
Xenbase:XB-GENE-962966
See related
Ensembl:ENSXETG00000039584 AllianceGenome:Xenbase:XB-GENE-962966
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
scg10; sgc10; scgn10; stmn2c; stmn2-a; stmn2-b
Summary
Predicted to act upstream of or within regulation of microtubule polymerization or depolymerization. Predicted to be located in cytoplasm; lamellipodium; and membrane. Is expressed in ectoderm and nervous system. Orthologous to human STMN2 (stathmin 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See stmn2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (123297558..123428570)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (108565212..108583909)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene protein kinase (cAMP-dependent, catalytic) inhibitor alpha Neighboring gene zinc finger, C2HC-type containing 1A Neighboring gene uncharacterized LOC116411467 Neighboring gene hes related family bHLH transcription factor with YRPW motif 1 Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC89837

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within regulation of microtubule polymerization or depolymerization IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
stathmin-2
Names
stathmin-like 2
stathmin-like 2c

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005133.2NP_001005133.1  stathmin-2

    See identical proteins and their annotated locations for NP_001005133.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077672
    UniProtKB/TrEMBL
    A0A803JQK3, F6SR71, Q6DDB7
    Related
    ENSXETP00000118829.1, ENSXETT00000116516.1
    Conserved Domains (1) summary
    pfam00836
    Location:39173
    Stathmin; Stathmin family

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    123297558..123428570
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031903317.1XP_031759177.1  stathmin-2 isoform X1

    UniProtKB/TrEMBL
    A0A803JXJ0
    Related
    ENSXETP00000112729.1, ENSXETT00000119250.1
    Conserved Domains (1) summary
    pfam00836
    Location:90224
    Stathmin; Stathmin family