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srsf3 serine/arginine-rich splicing factor 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 448605, updated on 4-Nov-2024

Summary

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Official Symbol
srsf3provided by Xenbase
Official Full Name
serine/arginine-rich splicing factor 3provided by Xenbase
Primary source
Xenbase:XB-GENE-490817
See related
Ensembl:ENSXETG00000001701 AllianceGenome:Xenbase:XB-GENE-490817
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
sfrs3; srp20
Summary
Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA processing. Predicted to be located in nucleus. Is expressed in anatomical system; pharyngeal arch; and primary germ layer. Orthologous to human SRSF3 (serine and arginine rich splicing factor 3). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See srsf3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (54722708..54732492, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (67964650..67974439, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene RAB44, member RAS oncogene family Neighboring gene cyclin-dependent kinase inhibitor 1A Neighboring gene parathyroid hormone 4-like Neighboring gene adenosine A1 receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC52931, MGC89287

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
serine/arginine-rich splicing factor 3
Names
splicing factor, arginine serine-rich 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005054.1 → NP_001005054.1  serine/arginine-rich splicing factor 3

    See identical proteins and their annotated locations for NP_001005054.1

    Status: PROVISIONAL

    Source sequence(s)
    BC076942
    UniProtKB/TrEMBL
    F6ZVQ6, Q6DF01
    Related
    ENSXETP00000019790.3, ENSXETT00000019790.5
    Conserved Domains (1) summary
    cl17169
    Location:6 → 86
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    54722708..54732492 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012960068.3 → XP_012815522.1  serine/arginine-rich splicing factor 3 isoform X2

    UniProtKB/TrEMBL
    A0A803JDL8
    Related
    ENSXETP00000105976.1, ENSXETT00000106152.1
    Conserved Domains (2) summary
    COG0724
    Location:11 → 112
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl17169
    Location:25 → 105
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_012960072.3 → XP_012815526.1  serine/arginine-rich splicing factor 3 isoform X3

    UniProtKB/TrEMBL
    A0A8J0SH16
    Conserved Domains (1) summary
    cl17169
    Location:6 → 86
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_012960059.3 → XP_012815513.1  serine/arginine-rich splicing factor 3 isoform X1

    UniProtKB/TrEMBL
    A0A8J0SH10
    Related
    ENSXETP00000103199.1, ENSXETT00000116745.1
    Conserved Domains (2) summary
    COG0724
    Location:11 → 112
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl17169
    Location:25 → 105
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein Strain
Heading Accession and Version

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