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fgfr1op2 FGFR1 oncogene partner 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 448596, updated on 17-Aug-2024

Summary

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Official Symbol
fgfr1op2provided by Xenbase
Official Full Name
FGFR1 oncogene partner 2provided by Xenbase
Primary source
Xenbase:XB-GENE-975391
See related
Ensembl:ENSXETG00000016502
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See fgfr1op2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (2584147..2590994)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016684484.1 (1038..4395)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene inositol 1,4,5-trisphosphate receptor, type 2 Neighboring gene integrator complex subunit 13 Neighboring gene endonuclease, poly(U) specific like Neighboring gene cytochrome b5 reductase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC89199

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
involved_in response to wounding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
FGFR1 oncogene partner 2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006845.1 → NP_001006846.1  FGFR1 oncogene partner 2 homolog

    See identical proteins and their annotated locations for NP_001006846.1

    Status: PROVISIONAL

    Source sequence(s)
    BC076932
    UniProtKB/Swiss-Prot
    Q6DF11
    UniProtKB/TrEMBL
    A0A1B8XV76
    Related
    ENSXETP00000035989.4, ENSXETT00000035989.5
    Conserved Domains (1) summary
    pfam05769
    Location:2 → 183
    SIKE; SIKE family

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    2584147..2590994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031897842.1 → XP_031753702.1  FGFR1 oncogene partner 2 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1J757
    Conserved Domains (1) summary
    pfam05769
    Location:2 → 182
    SIKE; SIKE family
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6DF11.1 GenPept UniProtKB/Swiss-Prot:Q6DF11

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.