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ggnbp2 gametogenetin binding protein 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 448520, updated on 17-Aug-2024

Summary

Official Symbol
ggnbp2provided by Xenbase
Official Full Name
gametogenetin binding protein 2provided by Xenbase
Primary source
Xenbase:XB-GENE-942044
See related
Ensembl:ENSXETG00000002038
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
dif3; lzk1; dif-3; lcrg1; zfp403; znf403
Orthologs
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Genomic context

See ggnbp2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (72420861..72448900, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (64055152..64084501, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 Neighboring gene dehydrogenase/reductase (SDR family) member 11 Neighboring gene uncharacterized LOC116408835 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class W Neighboring gene myosin XIX

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC79684

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within spermatogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
gametogenetin-binding protein 2
Names
zinc finger protein 403

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006808.1NP_001006809.1  gametogenetin-binding protein 2

    See identical proteins and their annotated locations for NP_001006809.1

    Status: PROVISIONAL

    Source sequence(s)
    BC076685
    UniProtKB/Swiss-Prot
    Q6DFP9
    UniProtKB/TrEMBL
    A0A5S6K6K6
    Related
    ENSXETP00000004356.4, ENSXETT00000004356.4

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    72420861..72448900 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012959947.3XP_012815401.1  gametogenetin-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A5S6K6K6, A0A8J0SGW9
  2. XM_012959940.3XP_012815394.1  gametogenetin-binding protein 2 isoform X1

    See identical proteins and their annotated locations for XP_012815394.1

    UniProtKB/Swiss-Prot
    Q6DFP9
    UniProtKB/TrEMBL
    A0A5S6K6K6
    Related
    ENSXETP00000011781.5, ENSXETT00000011781.5