U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rlbp1 retinaldehyde binding protein 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 448050, updated on 4-Nov-2024

Summary

Official Symbol
rlbp1provided by Xenbase
Official Full Name
retinaldehyde binding protein 1provided by Xenbase
Primary source
Xenbase:XB-GENE-976303
See related
Ensembl:ENSXETG00000017770 AllianceGenome:Xenbase:XB-GENE-976303
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
CRALBP
Summary
Human ortholog(s) of this gene implicated in Bothnia retinal dystrophy; Newfoundland cone-rod dystrophy; fundus albipunctatus; night blindness; and retinitis pigmentosa. Orthologous to human RLBP1 (retinaldehyde binding protein 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See rlbp1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (109621445..109633703)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (99633574..99646919)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene Rh family C glycoprotein Neighboring gene uncharacterized LOC116409779 Neighboring gene TOPBP1-interacting checkpoint and replication regulator Neighboring gene abhydrolase domain containing 2 Neighboring gene milk fat globule-EGF factor 8 protein

Genomic regions, transcripts, and products

General protein information

Preferred Names
retinaldehyde-binding protein 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005455.1NP_001005455.1  retinaldehyde-binding protein 1

    See identical proteins and their annotated locations for NP_001005455.1

    Status: PROVISIONAL

    Source sequence(s)
    BC074571
    UniProtKB/TrEMBL
    A0A6I8QJF6, Q6GLC8
    Related
    ENSXETP00000068684.2, ENSXETT00000097150.2
    Conserved Domains (2) summary
    smart01100
    Location:60117
    CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
    pfam00650
    Location:143292
    CRAL_TRIO; CRAL/TRIO domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    109621445..109633703
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)