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lmo4.S LIM domain only 4, gene 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447751, updated on 2-Oct-2024

Summary

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Official Symbol
lmo4.S
Official Full Name
LIM domain only 4, gene 1 S homeolog
Primary source
Xenbase:XB-GENE-6486208
Locus tag
XELAEV_18025417mg
See related
EnsemblRapid:ENSXLAG00005008408
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
Xlmo4; lmo4.1; lmo4.1.L; lmo4.1.S
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Genomic context

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See lmo4.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (85818788..85846831, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (79485534..79513605, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene general transcription factor 2B S homeolog Neighboring gene protein kinase N2 S homeolog Neighboring gene heparan sulfate 2-O-sulfotransferase 1 S homeolog Neighboring gene selenoprotein F S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC83364

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
LIM domain only 4, gene 1 S homeolog
Names
LIM domain only 4, gene 1 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094421.2 → NP_001087890.2  LIM domain only 4, gene 1 S homeolog

    Status: PROVISIONAL

    Source sequence(s)
    BJ044735, BX842784, DC105732, DC130932
    UniProtKB/TrEMBL
    A0A1L8GGB4, A0A974D0N1
    Related
    ENSXLAP00005024300.1, ENSXLAT00005025008.1
    Conserved Domains (2) summary
    cd09386
    Location:23 → 77
    LIM1_LMO4; The first LIM domain of LMO4 (LIM domain only protein 4)
    cd09387
    Location:87 → 141
    LIM2_LMO4; The second LIM domain of LMO4 (LIM domain only protein 4)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    85818788..85846831 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018259663.2 → XP_018115152.1  LIM domain only 4, gene 1 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A1L8GGB4, A0A974D0N1
    Conserved Domains (2) summary
    cd09386
    Location:23 → 77
    LIM1_LMO4; The first LIM domain of LMO4 (LIM domain only protein 4)
    cd09387
    Location:87 → 141
    LIM2_LMO4; The second LIM domain of LMO4 (LIM domain only protein 4)

  2. XM_041591368.1 → XP_041447302.1  LIM domain only 4, gene 1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1MZU5
    Related
    ENSXLAP00005024280.1, ENSXLAT00005024988.1
    Conserved Domains (2) summary
    cd09386
    Location:53 → 107
    LIM1_LMO4; The first LIM domain of LMO4 (LIM domain only protein 4)
    cd09387
    Location:117 → 171
    LIM2_LMO4; The second LIM domain of LMO4 (LIM domain only protein 4)

  3. XM_041591369.1 → XP_041447303.1  LIM domain only 4, gene 1 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A1L8GGB4, A0A974D0N1
    Conserved Domains (2) summary
    cd09386
    Location:23 → 77
    LIM1_LMO4; The first LIM domain of LMO4 (LIM domain only protein 4)
    cd09387
    Location:87 → 141
    LIM2_LMO4; The second LIM domain of LMO4 (LIM domain only protein 4)
Nucleotide Protein Strain
Heading Accession and Version

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