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csf3r.L colony stimulating factor 3 receptor L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446770, updated on 18-Sep-2024

Summary

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Official Symbol
csf3r.L
Official Full Name
colony stimulating factor 3 receptor L homeolog
Primary source
Xenbase:XB-GENE-482180
Locus tag
XELAEV_18012028mg
See related
EnsemblRapid:ENSXLAG00005027258
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
cd114; csf3r; gcsfr
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Genomic context

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See csf3r.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (57163505..57198954)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (55068493..55104371)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene thyroid hormone receptor associated protein 3 L homeolog Neighboring gene SH3 domain containing 21 L homeolog Neighboring gene zinc finger and BTB domain containing 8B L homeolog Neighboring gene NIPA-like domain containing 3 L homeolog Neighboring gene sperm-tail PG-rich repeat containing 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80392

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables cytokine binding IEA
Inferred from Electronic Annotation
more info
  
enables cytokine receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cytokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
part_of receptor complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
colony stimulating factor 3 receptor L homeolog; granulocyte colony-stimulating factor receptor
Names
colony stimulating factor 3 receptor (granulocyte)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    57163505..57198954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041581903.1 → XP_041437837.1  granulocyte colony-stimulating factor receptor

    UniProtKB/TrEMBL
    A0A1L8HE29, A0A974DME1, Q6DD37
    Related
    ENSXLAP00005081025.1, ENSXLAT00005082636.1
    Conserved Domains (3) summary
    smart00060
    Location:521 → 601
    FN3; Fibronectin type 3 domain
    cd00063
    Location:261 → 317
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam06328
    Location:24 → 109
    Lep_receptor_Ig; Ig-like C2-type domain

  2. XM_041581904.1 → XP_041437838.1  granulocyte colony-stimulating factor receptor

    UniProtKB/TrEMBL
    A0A1L8HE29, A0A974DME1, Q6DD37
    Conserved Domains (3) summary
    smart00060
    Location:521 → 601
    FN3; Fibronectin type 3 domain
    cd00063
    Location:261 → 317
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam06328
    Location:24 → 109
    Lep_receptor_Ig; Ig-like C2-type domain

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001093466.1: Suppressed sequence

    Description
    NM_001093466.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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