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pip5k1b.L phosphatidylinositol-4-phosphate 5-kinase, type I, beta L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444238, updated on 4-Nov-2024

Summary

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Official Symbol
pip5k1b.L
Official Full Name
phosphatidylinositol-4-phosphate 5-kinase, type I, beta L homeolog
Primary source
Xenbase:XB-GENE-987078
Locus tag
XELAEV_18006868mg
See related
EnsemblRapid:ENSXLAG00005006008 AllianceGenome:Xenbase:XB-GENE-987078
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pip5k1b
Summary
Predicted to enable 1-phosphatidylinositol-4-phosphate 5-kinase activity and ATP binding activity. Predicted to act upstream of or within phosphatidylinositol phosphate biosynthetic process and phosphorylation. Predicted to be located in plasma membrane. Orthologous to human PIP5K1B (phosphatidylinositol-4-phosphate 5-kinase type 1 beta). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See pip5k1b.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (139951290..140031708)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (127544737..127625302)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene phosphoglucomutase-like protein 5 Neighboring gene transmembrane protein 252 L homeolog Neighboring gene tight junction protein 2 L homeolog Neighboring gene tight junction protein ZO-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80809

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables 1-phosphatidylinositol-4-phosphate 5-kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidylinositol kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phosphatidylinositol metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within phosphorylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
phosphatidylinositol-4-phosphate 5-kinase, type I, beta L homeolog
NP_001085811.1
XP_018100780.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092342.1 → NP_001085811.1  phosphatidylinositol-4-phosphate 5-kinase, type I, beta L homeolog

    See identical proteins and their annotated locations for NP_001085811.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073377
    UniProtKB/TrEMBL
    A0A974DUR8, Q6GNX4
    Related
    ENSXLAP00005017992.1, ENSXLAT00005018288.1
    Conserved Domains (1) summary
    smart00330
    Location:53 → 391
    PIPKc; Phosphatidylinositol phosphate kinases

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    139951290..140031708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018245291.2 → XP_018100780.1  phosphatidylinositol-4-phosphate 5-kinase, type I, beta L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8HYB0, A0A974DUR8, A0A974E0L8
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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