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ramp1 receptor activity modifying protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 436966, updated on 2-Nov-2024

Summary

Official Symbol
ramp1provided by ZNC
Official Full Name
receptor activity modifying protein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-446
See related
Ensembl:ENSDARG00000056704 AllianceGenome:ZFIN:ZDB-GENE-040718-446
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:91818
Summary
Predicted to enable coreceptor activity. Predicted to be involved in several processes, including calcium ion transport; protein localization to plasma membrane; and receptor internalization. Predicted to act upstream of or within intracellular protein transport and regulation of G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be part of receptor complex. Predicted to be active in cell surface. Orthologous to human RAMP1 (receptor activity modifying protein 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See ramp1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (28817996..28867578, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (29007250..29056816, complement)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene zgc:162780 Neighboring gene uncharacterized LOC101884827 Neighboring gene uncharacterized LOC137490688 Neighboring gene erythrocyte membrane protein band 4.1 like 5 Neighboring gene protein tyrosine phosphatase non-receptor type 4a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables coreceptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables coreceptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in calcium ion transport IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cellular response to hormone stimulus IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 
involved_in protein localization to plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in protein transport IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in receptor internalization IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within regulation of G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cell surface IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
part_of receptor complex IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
receptor activity-modifying protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002693.2NP_001002693.1  receptor activity-modifying protein 1 precursor

    See identical proteins and their annotated locations for NP_001002693.1

    Status: VALIDATED

    Source sequence(s)
    CR853293, CT573148, EH444589
    UniProtKB/TrEMBL
    A0A2R8QBM2, A0A2R8RHY4, Q6DGA3
    Related
    ENSDARP00000060320.5, ENSDART00000060321.6
    Conserved Domains (1) summary
    pfam04901
    Location:34142
    RAMP; Receptor activity modifying family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    28817996..28867578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394757.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    314301..315473 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395284.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    101452..151717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)