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LOC4345854 homeobox-leucine zipper protein HOX20-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345854, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4345854
Gene description
homeobox-leucine zipper protein HOX20-like
Locus tag
OSNPB_080481400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
HOX20; OsHox20
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Genomic context

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See LOC4345854 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (23943225..23945289, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (23803447..23805474, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g09410, mitochondrial Neighboring gene U-box domain-containing protein 15 Neighboring gene uncharacterized LOC4345855 Neighboring gene dicarboxylate transporter 2.1, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein HOX20
Names
HD-ZIP protein HOX20
Homeodomain transcription factor HOX20
LOC_Os08g37580
OSJNBb0092C08.26
putative homeodomain leucine zipper protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422601.1 → NP_001409530.1  homeobox-leucine zipper protein HOX20

    Status: VALIDATED

    Source sequence(s)
    AK106818, CI094584
    UniProtKB/Swiss-Prot
    A2YWC0, A5JPV8, B7EEM5, Q6Z248

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    23943225..23945289 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6Z248.1 GenPept UniProtKB/Swiss-Prot:Q6Z248

Gene LinkOut

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Molecular Biology Databases
Research Materials