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LOC4337074 homeobox-leucine zipper protein ROC2-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337074, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4337074
Gene description
homeobox-leucine zipper protein ROC2-like
Locus tag
OSNPB_040627000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
Roc2; GL2-2
Expression
Broad expression in roots after flowering (RPKM 10.1), leaves after flowering (RPKM 9.6) and 5 other tissues See more
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Genomic context

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See LOC4337074 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (32407814..32414813, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31900204..31907135, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene FBD-associated F-box protein At1g66310-like Neighboring gene putative F-box/FBD/LRR-repeat protein At5g56810 Neighboring gene uncharacterized LOC4337073 Neighboring gene uncharacterized LOC107278467 Neighboring gene uncharacterized LOC136356376

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein ROC2
Names
GL2-type homeodomain protein
GLABRA 2-like homeobox protein 2
HD-ZIP protein ROC2
Homeodomain transcription factor ROC2
LOC_Os04g53540
OSJNBb0060E08.16
Protein RICE OUTERMOST CELL-SPECIFIC 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402432.1 → NP_001389361.1  homeobox-leucine zipper protein ROC2 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AB101645, AK065819, CB683722, CI036511, CI308976
    UniProtKB/Swiss-Prot
    Q0J9X2, Q7XM83, Q7Y0W1

  2. NM_001402433.1 → NP_001389362.1  homeobox-leucine zipper protein ROC2 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AB101645, AK065819, CB683722, CI036511, CI639617
    UniProtKB/Swiss-Prot
    Q0J9X2, Q7XM83, Q7Y0W1

  3. NM_001402434.1 → NP_001389363.1  homeobox-leucine zipper protein ROC2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AB101645, AK065819, CB683722, CI036511, CI741430

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    32407814..32414813 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0J9X2.1 GenPept UniProtKB/Swiss-Prot:Q0J9X2

Gene LinkOut

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Molecular Biology Databases
Research Materials