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LOC4331248 zinc finger CCCH domain-containing protein 19-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331248, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4331248
Gene description
zinc finger CCCH domain-containing protein 19-like
Locus tag
OSNPB_020831100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsC3H19; OsJ_008677; OJ1149_C12.8
Expression
Ubiquitous expression in roots after flowering (RPKM 39.9), leaves after flowering (RPKM 37.2) and 6 other tissues See more
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Genomic context

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See LOC4331248 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (36237827..36241436)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35738972..35742610)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein phosphatase 7 long form homolog Neighboring gene uncharacterized LOC107280076 Neighboring gene large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic Neighboring gene uncharacterized LOC4331250

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 19
Names
LOC_Os02g58440

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423873.1 → NP_001410802.1  zinc finger CCCH domain-containing protein 19

    Status: VALIDATED

    Source sequence(s)
    CB645563, CB645564, CB679542, CI554306, CI770537, CV724040
    UniProtKB/Swiss-Prot
    A3AD05, Q6K977

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    36237827..36241436
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770603.3 → XP_015626089.1  zinc finger CCCH domain-containing protein 19 isoform X1

    Conserved Domains (1) summary
    smart00356
    Location:66 → 86
    ZnF_C3H1; zinc finger
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6K977.2 GenPept UniProtKB/Swiss-Prot:Q6K977

Gene LinkOut

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Molecular Biology Databases
Research Materials