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Gm5460 predicted gene 5460 [ Mus musculus (house mouse) ]

Gene ID: 432838, updated on 28-Oct-2024

Summary

Official Symbol
Gm5460provided by MGI
Official Full Name
predicted gene 5460provided by MGI
Primary source
MGI:MGI:3643519
See related
Ensembl:ENSMUSG00000072624 AllianceGenome:MGI:3643519
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG432838
Expression
Restricted expression toward testis adult (RPKM 10.4) See more
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Genomic context

See Gm5460 in Genome Data Viewer
Location:
14 B; 14 20.8 cM
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (33738252..33769071)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (34016295..34047114)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene retinol binding protein 3, interstitial Neighboring gene zinc finger protein 488 Neighboring gene predicted gene, 30083 Neighboring gene STARR-seq mESC enhancer starr_36360 Neighboring gene RIKEN cDNA A630023A22 gene Neighboring gene anthrax toxin receptor-like Neighboring gene STARR-seq mESC enhancer starr_36361 Neighboring gene annexin A8

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General protein information

Preferred Names
uncharacterized protein LOC432838

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034880.3NP_001030052.2  uncharacterized protein LOC432838 isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AC164099
    Consensus CDS
    CCDS49442.1
  2. NM_001416975.1NP_001403904.1  uncharacterized protein LOC432838 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC164099

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    33738252..33769071
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006519209.4XP_006519272.1  uncharacterized protein LOC432838 isoform X2

    UniProtKB/TrEMBL
    A0A2I3BRZ9
    Related
    ENSMUSP00000154683.2, ENSMUST00000227383.2
    Conserved Domains (2) summary
    pfam05587
    Location:174271
    Anth_Ig; Anthrax receptor extracellular domain
    cl00057
    Location:14179
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
  2. XM_006519211.1XP_006519274.1  uncharacterized protein LOC432838 isoform X4

    Conserved Domains (2) summary
    pfam05587
    Location:63160
    Anth_Ig; Anthrax receptor extracellular domain
    cl00057
    Location:568
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...