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tbxt.L T-box transcription factor Tr L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 432248, updated on 18-Sep-2024

Summary

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Official Symbol
tbxt.L
Official Full Name
T-box transcription factor Tr L homeolog
Primary source
Xenbase:XB-GENE-6255736
Locus tag
XELAEV_18026860mg
See related
EnsemblRapid:ENSXLAG00005028934
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
bu; tb; bra; ntl; t-a; t-b; t.L; t.S; Xbra; X-bra; Xbra2; brachyury; Xbrachyury
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Genomic context

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See tbxt.L in Genome Data Viewer
Location:
chromosome: 5L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (57442347..57449535, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (56206032..56213226, complement)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 10A L homeolog Neighboring gene T, brachyury homolog, gene 2 S homeolog Neighboring gene proline rich 18 L homeolog Neighboring gene SFT2 domain containing 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell fate specification IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within heart morphogenesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mesoderm formation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within somitogenesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
T-box transcription factor Tr L homeolog
Names
T brachyury transcription factor L homeolog
T brachyury transcription factor S homeolog
T, brachyury homolog b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091696.1 → NP_001085165.1  T-box transcription factor Tr L homeolog

    See identical proteins and their annotated locations for NP_001085165.1

    Status: PROVISIONAL

    Source sequence(s)
    BC072224
    UniProtKB/TrEMBL
    A0A974HJR2, Q6INQ0
    Related
    ENSXLAP00005086271.1, ENSXLAT00005087934.1
    Conserved Domains (2) summary
    cd00182
    Location:40 → 221
    TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...
    pfam10267
    Location:320 → 412
    Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    57442347..57449535 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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