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RHOBTB3 Rho related BTB domain containing 3 [ Gallus gallus (chicken) ]

Gene ID: 431569, updated on 10-Oct-2024

Summary

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Symbol
RHOBTB3provided by CGNC
Full Name
Rho related BTB domain containing 3provided by CGNC
Primary source
CGNC:10878
See related
Ensembl:ENSGALG00010012809
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See RHOBTB3 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
13
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (58172969..58203440, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (58172969..58203440, complement)

Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene elongation factor for RNA polymerase II 2 Neighboring gene glutaredoxin Neighboring gene Rieske Fe-S domain containing Neighboring gene arylsulfatase family member K

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rho-related BTB domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    58172969..58203440 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004949384.5 → XP_004949441.1  rho-related BTB domain-containing protein 3 isoform X2

    UniProtKB/TrEMBL
    F1NBA5
    Related
    ENSGALP00010017820.1, ENSGALT00010030728.1
    Conserved Domains (3) summary
    smart00225
    Location:415 → 512
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam00651
    Location:404 → 509
    BTB; BTB/POZ domain
    cl21455
    Location:53 → 176
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. XM_429123.8 → XP_429123.5  rho-related BTB domain-containing protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YFZ8
    Conserved Domains (3) summary
    cd18357
    Location:234 → 391
    BTB1_POZ_RHOBTB3; first BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Rho-related BTB domain-containing protein 3 (RhoBTB3)
    cd18360
    Location:405 → 514
    BTB2_POZ_RHOBTB3; second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Rho-related BTB domain-containing protein 3 (RhoBTB3)
    cl38936
    Location:53 → 177
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. XM_004949383.5 → XP_004949440.1  rho-related BTB domain-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    F1NBA5
    Related
    ENSGALP00010017823.1, ENSGALT00010030734.1
    Conserved Domains (3) summary
    smart00225
    Location:416 → 513
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam00651
    Location:405 → 510
    BTB; BTB/POZ domain
    cl21455
    Location:53 → 177
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RNA

  1. XR_005842673.2 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    58172969..58203440 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046936929.1 → XP_046792885.1  rho-related BTB domain-containing protein 3 isoform X2

  2. XM_046936930.1 → XP_046792886.1  rho-related BTB domain-containing protein 3 isoform X3

  3. XM_046936928.1 → XP_046792884.1  rho-related BTB domain-containing protein 3 isoform X1

RNA

  1. XR_006938023.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials