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WHRN whirlin [ Gallus gallus (chicken) ]

Gene ID: 429472, updated on 17-Aug-2024

Summary

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Symbol
WHRNprovided by CGNC
Full Name
whirlinprovided by CGNC
Primary source
CGNC:4742
See related
Ensembl:ENSGALG00010028895
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
DFNB31
Orthologs
human mouse all
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Genomic context

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See WHRN in Genome Data Viewer
Location:
chromosome: 17
Exon count:
13
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 17 NC_052548.1 (3138781..3165873, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 17 NC_052589.1 (2547045..2574194, complement)

Chromosome 17 - NC_052548.1Genomic Context describing neighboring genes Neighboring gene syntaxin binding protein 1 Neighboring gene microRNA 7442 Neighboring gene AT-hook transcription factor Neighboring gene ATPase H+ transporting V1 subunit G1 Neighboring gene transmembrane protein 268

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in auditory receptor cell stereocilium organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sensory perception of sound IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in photoreceptor inner segment IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of stereocilia ankle link complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stereocilium tip IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
whirlin
Names
deafness, autosomal recessive 31

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052548.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    3138781..3165873 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015279689.4 → XP_015135175.2  whirlin isoform X2

    UniProtKB/TrEMBL
    A0A8V1AAM7
    Related
    ENSGALP00010043034.1, ENSGALT00010069908.1
    Conserved Domains (3) summary
    cd00992
    Location:125 → 205
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd07357
    Location:406 → 485
    HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains
    cl11968
    Location:31 → 108
    harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)

  2. XM_427028.8 → XP_427028.6  whirlin isoform X1

    UniProtKB/TrEMBL
    A0A8V1AI21
    Related
    ENSGALP00010043033.1, ENSGALT00010069907.1
    Conserved Domains (3) summary
    cd00992
    Location:125 → 205
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd07357
    Location:406 → 485
    HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains
    cl11968
    Location:31 → 108
    harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052589.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    2547045..2574194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040685795.2 → XP_040541729.1  whirlin isoform X2

    Conserved Domains (3) summary
    cd00992
    Location:125 → 205
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd07357
    Location:406 → 485
    HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains
    cl11968
    Location:31 → 108
    harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)

  2. XM_040685794.2 → XP_040541728.1  whirlin isoform X1

    Conserved Domains (3) summary
    cd00992
    Location:125 → 205
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd07357
    Location:406 → 485
    HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains
    cl11968
    Location:31 → 108
    harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
Nucleotide Protein
Heading Accession and Version

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