SF3A1 splicing factor 3a subunit 1 [Gallus gallus (chicken)] - Gene

Summary

Symbol: SF3A1provided by CGNC
Full Name: splicing factor 3a subunit 1provided by CGNC
Primary source: CGNC:6003
See related: Ensembl:ENSGALG00010000215
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 15

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	15	NC_052546.1 (10830742..10844235)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	15	NC_052587.1 (10842653..10856146)

Chromosome 15 - NC_052546.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in mRNA cis splicing, via spliceosome	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of alternative mRNA splicing, via spliceosome	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of U2 snRNP	IEA Inferred from Electronic Annotation more info	PubMed
part_of U2-type prespliceosome	IEA Inferred from Electronic Annotation more info	PubMed
part_of catalytic step 2 spliceosome	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: splicing factor 3A subunit 1

Names: splicing factor 3a, subunit 1, 120kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001031472.3 → NP_001026643.2 splicing factor 3A subunit 1

See identical proteins and their annotated locations for NP_001026643.2

Status: VALIDATED

Source sequence(s)

JAENSK010000260

UniProtKB/TrEMBL

F1NU16, Q5ZM84

Related

ENSGALP00010000228.1, ENSGALT00010000434.1

Conserved Domains (4) summary

smart00648
Location:48 → 101

SWAP; Suppressor-of-White-APricot splicing regulator

cd01800
Location:701 → 783

Ubl_SF3a120; ubiquitin-like (Ubl) domain found in splicing factor 3A 120kDa subunit (SF3a120) and similar proteins

pfam01805
Location:162 → 212

Surp; Surp module

pfam12230
Location:229 → 469

PRP21_like_P; Pre-mRNA splicing factor PRP21 like protein