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SH3TC2 SH3 domain and tetratricopeptide repeats 2 [ Gallus gallus (chicken) ]

Gene ID: 426627, updated on 17-Aug-2024

Summary

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Symbol
SH3TC2provided by CGNC
Full Name
SH3 domain and tetratricopeptide repeats 2provided by CGNC
Primary source
CGNC:66507
See related
Ensembl:ENSGALG00010012312
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SH3TC2 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
21
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (8204228..8235901)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (8209485..8241073)

Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121106735 Neighboring gene actin filament associated protein 1 like 1 Neighboring gene actin binding LIM protein family member 3 Neighboring gene adrenoceptor beta 2 Neighboring gene uncharacterized LOC112533432

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of ERBB signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in recycling endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SH3 domain and tetratricopeptide repeats-containing protein 2; SH3 domain and tetratricopeptide repeat-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    8204228..8235901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040647139.2 → XP_040503073.1  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YM04
    Conserved Domains (4) summary
    COG0457
    Location:1120 → 1297
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:1205 → 1232
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1217 → 1274
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:346 → 400
    SH3; Src Homology 3 domain superfamily

  2. XM_025154907.3 → XP_025010675.2  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YM04
    Related
    ENSGALP00010017132.1, ENSGALT00010029475.1
    Conserved Domains (4) summary
    COG0457
    Location:1120 → 1297
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:1205 → 1232
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1217 → 1274
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:346 → 400
    SH3; Src Homology 3 domain superfamily

  3. XM_040647137.2 → XP_040503071.1  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YM04
    Conserved Domains (4) summary
    COG0457
    Location:1120 → 1297
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:1205 → 1232
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1217 → 1274
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:346 → 400
    SH3; Src Homology 3 domain superfamily

  4. XM_040647141.2 → XP_040503075.1  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X2

    Conserved Domains (1) summary
    cl17036
    Location:346 → 400
    SH3; Src Homology 3 domain superfamily

  5. XM_040647142.2 → XP_040503076.1  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X3

    Conserved Domains (3) summary
    sd00006
    Location:1118 → 1145
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1130 → 1187
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:259 → 313
    SH3; Src Homology 3 domain superfamily

  6. XM_040647143.2 → XP_040503077.1  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X3

    Conserved Domains (3) summary
    sd00006
    Location:1118 → 1145
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1130 → 1187
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:259 → 313
    SH3; Src Homology 3 domain superfamily

  7. XM_040647140.2 → XP_040503074.1  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YM04
    Conserved Domains (4) summary
    COG0457
    Location:1120 → 1297
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:1205 → 1232
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1217 → 1274
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:346 → 400
    SH3; Src Homology 3 domain superfamily

  8. XM_040647144.2 → XP_040503078.1  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X4

    Conserved Domains (1) summary
    cl17036
    Location:346 → 400
    SH3; Src Homology 3 domain superfamily

  9. XM_040647145.2 → XP_040503079.1  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X5

    Conserved Domains (2) summary
    pfam13424
    Location:915 → 984
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:346 → 400
    SH3; Src Homology 3 domain superfamily

RNA

  1. XR_005839611.2 RNA Sequence

  2. XR_005839610.2 RNA Sequence

  3. XR_005839612.2 RNA Sequence

  4. XR_005839609.2 RNA Sequence

  5. XR_005839613.2 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    8209485..8241073
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040683017.2 → XP_040538951.1  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X1

    Conserved Domains (4) summary
    COG0457
    Location:1120 → 1297
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:1205 → 1232
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1217 → 1274
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:346 → 400
    SH3; Src Homology 3 domain superfamily

  2. XM_046927173.1 → XP_046783129.1  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X1

  3. XM_040683019.2 → XP_040538953.1  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X2

    Conserved Domains (1) summary
    cl17036
    Location:346 → 400
    SH3; Src Homology 3 domain superfamily

  4. XM_040683020.2 → XP_040538954.1  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X3

    Conserved Domains (3) summary
    sd00006
    Location:1118 → 1145
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1130 → 1187
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:259 → 313
    SH3; Src Homology 3 domain superfamily

  5. XM_040683021.2 → XP_040538955.1  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X3

    Conserved Domains (3) summary
    sd00006
    Location:1118 → 1145
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1130 → 1187
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:259 → 313
    SH3; Src Homology 3 domain superfamily

  6. XM_040683018.2 → XP_040538952.1  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X1

    Conserved Domains (4) summary
    COG0457
    Location:1120 → 1297
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:1205 → 1232
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1217 → 1274
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:346 → 400
    SH3; Src Homology 3 domain superfamily

  7. XM_040683016.2 → XP_040538950.1  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X1

    Conserved Domains (4) summary
    COG0457
    Location:1120 → 1297
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:1205 → 1232
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1217 → 1274
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:346 → 400
    SH3; Src Homology 3 domain superfamily

  8. XM_040683022.2 → XP_040538956.1  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X4

    Conserved Domains (1) summary
    cl17036
    Location:346 → 400
    SH3; Src Homology 3 domain superfamily

  9. XM_040683023.2 → XP_040538957.1  SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X5

    Conserved Domains (3) summary
    sd00006
    Location:916 → 942
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:915 → 984
    TPR_12; Tetratricopeptide repeat
    cl17036
    Location:346 → 400
    SH3; Src Homology 3 domain superfamily

RNA

  1. XR_005854000.2 RNA Sequence

  2. XR_005853999.2 RNA Sequence

  3. XR_005854001.2 RNA Sequence

  4. XR_005853998.2 RNA Sequence

  5. XR_005854002.2 RNA Sequence

Nucleotide Protein Strain
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