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GATAD2B GATA zinc finger domain containing 2B [ Gallus gallus (chicken) ]

Gene ID: 426098, updated on 10-Oct-2024

Summary

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Symbol
GATAD2Bprovided by CGNC
Full Name
GATA zinc finger domain containing 2Bprovided by CGNC
Primary source
CGNC:66497
See related
Ensembl:ENSGALG00010028211
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See GATAD2B in Genome Data Viewer
Location:
chromosome: 25
Exon count:
18
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 25 NC_052556.1 (1810358..1839972)

Chromosome 25 - NC_052556.1Genomic Context describing neighboring genes Neighboring gene integrator complex subunit 3 Neighboring gene DENN domain-containing protein 4B-like Neighboring gene long-chain fatty acid transport protein 3-like Neighboring gene jumping translocation breakpoint

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052556.1 Chromosome 25 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of NuRD complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcriptional repressor p66-beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052556.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1810358..1839972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040652588.2 → XP_040508522.1  transcriptional repressor p66-beta isoform X1

    UniProtKB/TrEMBL
    A0A8V1AD42, A0A8V1AFS5
    Conserved Domains (2) summary
    pfam08580
    Location:120 → 364
    KAR9; Yeast cortical protein KAR9
    cl02475
    Location:393 → 441
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  2. XM_040652590.2 → XP_040508524.1  transcriptional repressor p66-beta isoform X3

    UniProtKB/TrEMBL
    A0A8V1AFS5
    Conserved Domains (2) summary
    pfam08580
    Location:120 → 355
    KAR9; Yeast cortical protein KAR9
    cl02475
    Location:384 → 432
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  3. XM_040652589.2 → XP_040508523.1  transcriptional repressor p66-beta isoform X2

    UniProtKB/TrEMBL
    A0A8V1AFS5
    Conserved Domains (2) summary
    pfam08580
    Location:120 → 361
    KAR9; Yeast cortical protein KAR9
    cl02475
    Location:390 → 438
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  4. XM_040652593.1 → XP_040508527.1  transcriptional repressor p66-beta isoform X1

    UniProtKB/TrEMBL
    A0A8V1AD42, A0A8V1AFS5
    Conserved Domains (2) summary
    pfam08580
    Location:120 → 364
    KAR9; Yeast cortical protein KAR9
    cl02475
    Location:393 → 441
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  5. XM_046904033.1 → XP_046759989.1  transcriptional repressor p66-beta isoform X1

    UniProtKB/TrEMBL
    A0A8V1AD42

  6. XM_046904031.1 → XP_046759987.1  transcriptional repressor p66-beta isoform X4

  7. XM_040652592.2 → XP_040508526.1  transcriptional repressor p66-beta isoform X1

    UniProtKB/TrEMBL
    A0A8V1AD42, A0A8V1AFS5
    Related
    ENSGALP00010042106.1, ENSGALT00010068371.1
    Conserved Domains (2) summary
    pfam08580
    Location:120 → 364
    KAR9; Yeast cortical protein KAR9
    cl02475
    Location:393 → 441
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  8. XM_040652591.2 → XP_040508525.1  transcriptional repressor p66-beta isoform X5

    UniProtKB/TrEMBL
    A0A8V1A828, A0A8V1AFS5
    Related
    ENSGALP00010042107.1, ENSGALT00010068373.1
    Conserved Domains (2) summary
    pfam08580
    Location:133 → 377
    KAR9; Yeast cortical protein KAR9
    cl02475
    Location:406 → 454
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  9. XM_046904035.1 → XP_046759991.1  transcriptional repressor p66-beta isoform X1

    UniProtKB/TrEMBL
    A0A8V1AD42

  10. XM_046904034.1 → XP_046759990.1  transcriptional repressor p66-beta isoform X1

    UniProtKB/TrEMBL
    A0A8V1AD42

  11. XM_015273153.4 → XP_015128639.3  transcriptional repressor p66-beta isoform X1

    UniProtKB/TrEMBL
    A0A8V1AD42, A0A8V1AFS5
    Related
    ENSGALP00010042104.1, ENSGALT00010068367.1
    Conserved Domains (2) summary
    pfam08580
    Location:120 → 364
    KAR9; Yeast cortical protein KAR9
    cl02475
    Location:393 → 441
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  12. XM_046904032.1 → XP_046759988.1  transcriptional repressor p66-beta isoform X1

    UniProtKB/TrEMBL
    A0A8V1AD42
Nucleotide Protein
Heading Accession and Version

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