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SNF4Agamma SNF4/AMP-activated protein kinase gamma subunit [ Drosophila melanogaster (fruit fly) ]

Gene ID: 42515, updated on 2-Nov-2024

Summary

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Official Symbol
SNF4Agammaprovided by FlyBase
Official Full Name
SNF4/AMP-activated protein kinase gamma subunitprovided by FlyBase
Primary source
FLYBASE:FBgn0264357
Locus tag
Dmel_CG17299
See related
AllianceGenome:FB:FBgn0264357
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
0050/42; 0127/19; AMPgamma; AMPK; AMPK-gamma; AMPKgamma; anon-WO0118547.338; anon-WO0118547.575; anon-WO0257455.21; CG17299; CG5806; Dmel\CG17299; EP3015b; FBgn0025803; l(3)S005042; l(3)S012719; loe; loeI; snf4; SNF4; SNF4a; SNF4A; SNF4A-gamma; SNF4Ag; SNF4gamma; Snfg; Snfgamma
Summary
Predicted to enable AMP binding activity; protein kinase binding activity; and protein kinase regulator activity. Involved in several processes, including behavioral response to starvation; cholesterol homeostasis; and sequestering of triglyceride. Located in cytoplasm and nucleus. Is expressed in several structures, including adult head; adult ventral nerve cord; anterior endoderm; embryonic/larval midgut primordium; and larval midline neurons. Used to study neurodegenerative disease. Human ortholog(s) of this gene implicated in Wolff-Parkinson-White syndrome; glycogen storage disease; hypertrophic cardiomyopathy 6; and lethal congenital glycogen storage disease of heart. Orthologous to several human genes including PRKAG2 (protein kinase AMP-activated non-catalytic subunit gamma 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

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See SNF4Agamma in Genome Data Viewer
Location:
93C1-93C5; 3-71 cM
Exon count:
27
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (21140739..21214269)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (16966461..17039991)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Ubiquitin specific protease 8 Neighboring gene medial glomeruli Neighboring gene Common Dpr-interacting protein Neighboring gene uncharacterized protein Neighboring gene Sensory neuron membrane protein 1 Neighboring gene pseudo Neighboring gene DDRGK domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SNF4Agamma, the Drosophila AMPK gamma subunit is required for regulation of developmental and stress-induced autophagy. Lippai M, et al. Autophagy, 2008 May. PMID 18285699
  2. Flip-flop Mediated Conditional Gene Inactivation in Drosophila. Manivannan SN, et al. Bio Protoc, 2019 Feb 5. PMID 31179351, Free PMC Article
  3. Energy-dependent modulation of glucagon-like signaling in Drosophila via the AMP-activated protein kinase. Braco JT, et al. Genetics, 2012 Oct. PMID 22798489, Free PMC Article
  4. Glycolipid trafficking in Drosophila undergoes pathway switching in response to aberrant cholesterol levels. Hortsch R, et al. Mol Biol Cell, 2010 Mar 1. PMID 20053687, Free PMC Article
  5. Lipophorin receptor 1 (LpR1) in Drosophila muscle influences life span by regulating mitochondrial aging. Kim AK, et al. Biochem Biophys Res Commun, 2021 Sep 3. PMID 34217014

See all (100) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Study finds that AMP-activated protein kinase (SNF4Agamma) regulates circadian rhythm by affecting CLOCK in drosophila. Study shows that the AMPKgamma subunit of AMPK, a central regulator of cellular metabolism, copurifies with the CLK/CYC complex in Drosophila S2 cells.
    Title: AMP-Activated Protein Kinase Regulates Circadian Rhythm by Affecting CLOCK in Drosophila.
  2. AMPK gamma and alpha mutants altered lipid metabolism and showed persistent starvation behaviors.
    Title: Altered metabolism and persistent starvation behaviors caused by reduced AMPK function in Drosophila.
  3. Results demonstrate that SNF4Agamma has an essential role in the regulation of autophagy in Drosophila larval fat body cells.
    Title: SNF4Agamma, the Drosophila AMPK gamma subunit is required for regulation of developmental and stress-induced autophagy.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables AMP binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein kinase binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein kinase binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein kinase regulator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in autophagy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in behavioral response to starvation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in cellular response to glucose starvation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in cellular response to starvation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in cholesterol homeostasis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in lipid metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of cell cycle IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in positive regulation of gluconeogenesis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of carbon utilization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of glycolytic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in sequestering of triglyceride IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
part_of nucleotide-activated protein kinase complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
SNF4/AMP-activated protein kinase gamma subunit
Names
AMP-activated protein kinase gamma subunit
CG17299-PA
CG17299-PB
CG17299-PC
CG17299-PE
CG17299-PF
CG17299-PG
CG17299-PI
CG17299-PJ
CG17299-PK
CG17299-PM
CG17299-PN
CG17299-PO
CG17299-PP
CG17299-PQ
CG17299-PR
CG17299-PS
SNF4/AMP-activated protein kinase gamma
SNF4Agamma-PA
SNF4Agamma-PB
SNF4Agamma-PC
SNF4Agamma-PE
SNF4Agamma-PF
SNF4Agamma-PG
SNF4Agamma-PI
SNF4Agamma-PJ
SNF4Agamma-PK
SNF4Agamma-PM
SNF4Agamma-PN
SNF4Agamma-PO
SNF4Agamma-PP
SNF4Agamma-PQ
SNF4Agamma-PR
SNF4Agamma-PS
lethal (3) S005042
lethal (3) S012719
lochrig
loechrig

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    21140739..21214269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_169946.2 → NP_732594.1  SNF4/AMP-activated protein kinase gamma subunit, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_732594.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7JQX9
    Related
    FBpp0083421
    Conserved Domains (3) summary
    COG0517
    Location:570 → 688
    CBS; CBS domain [Signal transduction mechanisms]
    cd04618
    Location:488 → 616
    CBS_pair_5; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
    cd04641
    Location:644 → 762
    CBS_pair_28; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...

  2. NM_080509.3 → NP_536757.2  SNF4/AMP-activated protein kinase gamma subunit, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_536757.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7JQX9
    Related
    FBpp0083422
    Conserved Domains (3) summary
    COG0517
    Location:570 → 688
    CBS; CBS domain [Signal transduction mechanisms]
    cd04618
    Location:488 → 616
    CBS_pair_5; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
    cd04641
    Location:644 → 762
    CBS_pair_28; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...

  3. NM_001170200.2 → NP_001163671.1  SNF4/AMP-activated protein kinase gamma subunit, isoform R [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001163671.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8SZS7, Q9VDD2
    Conserved Domains (3) summary
    COG0517
    Location:1023 → 1141
    CBS; CBS domain [Signal transduction mechanisms]
    cd04618
    Location:941 → 1069
    CBS_pair_5; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
    cd04641
    Location:1097 → 1215
    CBS_pair_28; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...

  4. NM_169947.3 → NP_732598.1  SNF4/AMP-activated protein kinase gamma subunit, isoform F [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_732598.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8SZS7, Q9VDD2
    Related
    FBpp0083423
    Conserved Domains (3) summary
    COG0517
    Location:1023 → 1141
    CBS; CBS domain [Signal transduction mechanisms]
    cd04618
    Location:941 → 1069
    CBS_pair_5; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
    cd04641
    Location:1097 → 1215
    CBS_pair_28; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...

  5. NM_001170201.2 → NP_001163672.1  SNF4/AMP-activated protein kinase gamma subunit, isoform S [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001163672.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8SZS7, Q9VDD2
    Conserved Domains (3) summary
    COG0517
    Location:1023 → 1141
    CBS; CBS domain [Signal transduction mechanisms]
    cd04618
    Location:941 → 1069
    CBS_pair_5; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
    cd04641
    Location:1097 → 1215
    CBS_pair_28; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...

  6. NM_001104385.2 → NP_001097855.1  SNF4/AMP-activated protein kinase gamma subunit, isoform N [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001097855.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A1A6Y3, A1A703
    Conserved Domains (3) summary
    COG0517
    Location:237 → 355
    CBS; CBS domain [Signal transduction mechanisms]
    cd04618
    Location:155 → 283
    CBS_pair_5; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
    cd04641
    Location:311 → 429
    CBS_pair_28; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...

  7. NM_001104384.3 → NP_001097854.1  SNF4/AMP-activated protein kinase gamma subunit, isoform M [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001097854.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A1A6Y3, A1A703
    Conserved Domains (3) summary
    COG0517
    Location:237 → 355
    CBS; CBS domain [Signal transduction mechanisms]
    cd04618
    Location:155 → 283
    CBS_pair_5; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
    cd04641
    Location:311 → 429
    CBS_pair_28; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...

  8. NM_001043271.3 → NP_001036736.2  SNF4/AMP-activated protein kinase gamma subunit, isoform O [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001036736.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A1A6Y3, A1A703
    Conserved Domains (3) summary
    COG0517
    Location:237 → 355
    CBS; CBS domain [Signal transduction mechanisms]
    cd04618
    Location:155 → 283
    CBS_pair_5; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
    cd04641
    Location:311 → 429
    CBS_pair_28; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...

  9. NM_001170198.2 → NP_001163669.1  SNF4/AMP-activated protein kinase gamma subunit, isoform P [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001163669.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8I0B2, Q8SXT8
    Conserved Domains (3) summary
    COG0517
    Location:529 → 647
    CBS; CBS domain [Signal transduction mechanisms]
    cd04618
    Location:447 → 575
    CBS_pair_5; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
    cd04641
    Location:603 → 721
    CBS_pair_28; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...

  10. NM_169948.3 → NP_732599.1  SNF4/AMP-activated protein kinase gamma subunit, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_732599.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8I0B2, Q8SXT8
    Related
    FBpp0083424
    Conserved Domains (3) summary
    COG0517
    Location:529 → 647
    CBS; CBS domain [Signal transduction mechanisms]
    cd04618
    Location:447 → 575
    CBS_pair_5; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
    cd04641
    Location:603 → 721
    CBS_pair_28; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...

  11. NM_001043273.3 → NP_001036738.1  SNF4/AMP-activated protein kinase gamma subunit, isoform J [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001036738.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8I0B2, Q8SXT8
    Conserved Domains (3) summary
    COG0517
    Location:529 → 647
    CBS; CBS domain [Signal transduction mechanisms]
    cd04618
    Location:447 → 575
    CBS_pair_5; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
    cd04641
    Location:603 → 721
    CBS_pair_28; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...

  12. NM_169949.3 → NP_732600.1  SNF4/AMP-activated protein kinase gamma subunit, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_732600.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8I0B2, Q8SXT8
    Related
    FBpp0083425
    Conserved Domains (3) summary
    COG0517
    Location:529 → 647
    CBS; CBS domain [Signal transduction mechanisms]
    cd04618
    Location:447 → 575
    CBS_pair_5; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
    cd04641
    Location:603 → 721
    CBS_pair_28; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...

  13. NM_001170199.2 → NP_001163670.1  SNF4/AMP-activated protein kinase gamma subunit, isoform Q [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001163670.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8I0B2, Q8SXT8
    Conserved Domains (3) summary
    COG0517
    Location:529 → 647
    CBS; CBS domain [Signal transduction mechanisms]
    cd04618
    Location:447 → 575
    CBS_pair_5; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
    cd04641
    Location:603 → 721
    CBS_pair_28; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...

  14. NM_001043272.2 → NP_001036737.1  SNF4/AMP-activated protein kinase gamma subunit, isoform K [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001036737.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8I0B2, Q8SXT8
    Conserved Domains (3) summary
    COG0517
    Location:529 → 647
    CBS; CBS domain [Signal transduction mechanisms]
    cd04618
    Location:447 → 575
    CBS_pair_5; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
    cd04641
    Location:603 → 721
    CBS_pair_28; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...

  15. NM_169950.3 → NP_732601.1  SNF4/AMP-activated protein kinase gamma subunit, isoform G [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_732601.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8I0A1, Q8I0K6
    Related
    FBpp0083427
    Conserved Domains (3) summary
    COG0517
    Location:437 → 555
    CBS; CBS domain [Signal transduction mechanisms]
    cd04618
    Location:355 → 483
    CBS_pair_5; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
    cd04641
    Location:511 → 629
    CBS_pair_28; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...

  16. NM_001043274.2 → NP_001036739.1  SNF4/AMP-activated protein kinase gamma subunit, isoform I [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001036739.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q0KI34, Q8IGX0
    Conserved Domains (3) summary
    COG0517
    Location:161 → 279
    CBS; CBS domain [Signal transduction mechanisms]
    cd04618
    Location:79 → 207
    CBS_pair_5; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
    cd04641
    Location:235 → 353
    CBS_pair_28; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A1A703 A1A703
O96613 O96613
Q0KI34 Q0KI34
Q7JQX9 Q7JQX9
Q7KNS9 Q7KNS9
Q8I0A1 Q8I0A1
Q8I0B2 Q8I0B2
Q8I0K6 Q8I0K6
Q8IGX0 Q8IGX0
Q8SXT8 Q8SXT8
Q9VDD2 Q9VDD2

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