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ABCA4 ATP binding cassette subfamily A member 4 [ Gallus gallus (chicken) ]

Gene ID: 424490, updated on 17-Aug-2024

Summary

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Official Symbol
ABCA4provided by CGNC
Official Full Name
ATP binding cassette subfamily A member 4provided by CGNC
Primary source
CGNC:52205
See related
Ensembl:ENSGALG00010021143
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See ABCA4 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
51
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 8 NC_052539.1 (13384837..13471975)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 8 NC_052580.1 (13391547..13478714)

Chromosome 8 - NC_052539.1Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily D member 3 Neighboring gene uncharacterized LOC107053966 Neighboring gene Rho GTPase activating protein 29 Neighboring gene uncharacterized LOC107053962 Neighboring gene trans-2,3-enoyl-CoA reductase-like Neighboring gene deoxynucleotidyltransferase terminal interacting protein 2 Neighboring gene glutamate-cysteine ligase modifier subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mapping the ABCA4, IMPDH2 and TIMP3 genes in chicken. Paton IR, et al. Anim Genet, 2003 Oct. PMID 14510686

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATPase-coupled intramembrane lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinal-specific ATP-binding cassette transporter; retinal-specific phospholipid-transporting ATPase ABCA4
Names
ATP-binding cassette sub-family A member 4
ATP-binding cassette, sub-family A (ABC1), member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052539.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    13384837..13471975
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015290703.4 → XP_015146189.1  retinal-specific phospholipid-transporting ATPase ABCA4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZHX3
    Conserved Domains (2) summary
    TIGR01257
    Location:1 → 2321
    rim_protein; retinal-specific rim ABC transporter
    cd03263
    Location:1987 → 2207
    ABC_subfamily_A; ATP-binding cassette domain of the lipid transporters, subfamily A

  2. XM_040705039.2 → XP_040560973.1  retinal-specific phospholipid-transporting ATPase ABCA4 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZHX3
    Conserved Domains (1) summary
    TIGR01257
    Location:1 → 2290
    rim_protein; retinal-specific rim ABC transporter

  3. XM_040705040.2 → XP_040560974.1  retinal-specific phospholipid-transporting ATPase ABCA4 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZGI9, A0A8V0ZHX3
    Related
    ENSGALP00010030395.1, ENSGALT00010051204.1
    Conserved Domains (1) summary
    TIGR01257
    Location:1 → 2247
    rim_protein; retinal-specific rim ABC transporter

  4. XM_046944750.1 → XP_046800706.1  retinal-specific phospholipid-transporting ATPase ABCA4 isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZHX3

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052580.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    13391547..13478714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040678174.2 → XP_040534108.1  retinal-specific phospholipid-transporting ATPase ABCA4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZHX3
    Conserved Domains (1) summary
    TIGR01257
    Location:1 → 2321
    rim_protein; retinal-specific rim ABC transporter

  2. XM_040678175.2 → XP_040534109.1  retinal-specific phospholipid-transporting ATPase ABCA4 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZHX3
    Conserved Domains (1) summary
    TIGR01257
    Location:1 → 2290
    rim_protein; retinal-specific rim ABC transporter

  3. XM_040678176.2 → XP_040534110.1  retinal-specific phospholipid-transporting ATPase ABCA4 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZHX3
    Conserved Domains (1) summary
    TIGR01257
    Location:1 → 2247
    rim_protein; retinal-specific rim ABC transporter

  4. XM_046923326.1 → XP_046779282.1  retinal-specific phospholipid-transporting ATPase ABCA4 isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZHX3
Nucleotide Protein
Heading Accession and Version

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