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DPCD deleted in primary ciliary dyskinesia homolog (mouse) [ Gallus gallus (chicken) ]

Gene ID: 423852, updated on 17-Aug-2024

Summary

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Symbol
DPCDprovided by CGNC
Full Name
deleted in primary ciliary dyskinesia homolog (mouse)provided by CGNC
Primary source
CGNC:52065
See related
Ensembl:ENSGALG00010019139
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See DPCD in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (23590394..23597865, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (23481642..23489114, complement)

Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121111210 Neighboring gene fibroblast growth factor 8 Neighboring gene DNA polymerase lambda Neighboring gene microRNA 1674 Neighboring gene solute carrier family 2, facilitated glucose transporter member 9-like Neighboring gene beta-transducin repeat containing E3 ubiquitin protein ligase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein DPCD
Names
deleted in a mouse model of primary ciliary dyskinesia

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277365.1 → NP_001264294.1  protein DPCD isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    BU353811, BU399154, BX932782
    UniProtKB/TrEMBL
    A0A8V0Z9I2
    Conserved Domains (1) summary
    pfam14913
    Location:6 → 200
    DPCD; DPCD protein family

  2. NM_001277366.2 → NP_001264295.1  protein DPCD isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    JAENSK010000232
    UniProtKB/TrEMBL
    A0A8V0Z9I2
    Related
    ENSGALP00010027597.1, ENSGALT00010046334.1
    Conserved Domains (1) summary
    pfam14913
    Location:6 → 194
    DPCD; DPCD protein family

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    23590394..23597865 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    23481642..23489114 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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